plot_venn_diagram: Plot Venn Diagram

In luciorq/txomics: Functional Analysis and Visualization of Transcriptomic Data

Description

Plot Venn diagrams, from de_analysis or gsea_analysis results **Currentry, this version only plots venn diagram with four groups and just save files to file, don't plot directly**

Usage

plot_venn_diagram(..., pvalue = 0.05, fdr = FALSE, names = NULL,
  filename, width = 9, height = NULL)

Arguments

...	de_analysis or gsea_analysis data frames
pvalue	p-value cut-off for enrichment or differential consideration, default = 0.05
fdr	logical, default = FALSE should False discovery rate adjusted pvalue be used instead of pvalue
names	vector with names to be used for each group
filename	path to were the image should be saved
width	value to be used as the width of the plot, the venn diagram will be plotted as a square with side of the smaller value, between width and height
height	value to be used as the height of the plot, the venn diagram will be plotted as a square of the smaller value, between width and height. heigth cam be ommited and the plot will be a square.

luciorq/txomics documentation built on Sept. 3, 2020, 5:36 a.m.