plot_volcano: Volcano Plot

In luciorq/txomics: Functional Analysis and Visualization of Transcriptomic Data

Description

A volcano plot from DE genes analysis results.

Usage

plot_volcano(de_res, pvalue = 0.05, lfc_threshold = NULL,
  fdr = FALSE, max = 30)

Arguments

de_res	de_analysis results
pvalue	p-value cut-off for enrichment or differential consideration, default = 0.05
lfc_threshold	absolute value of log2FoldChange to limit the significance
fdr	logical, default = FALSE should False discovery rate adjusted pvalue be used instead of pvalue
max	maximum number of names of DEGs to be plotted. Default = 30.

Value

A ggplot object

luciorq/txomics documentation built on Sept. 3, 2020, 5:36 a.m.