Files in magnusdv/pedtools

Creating and Working with Pedigrees and Marker Data

.Rbuildignore

.gitignore

DESCRIPTION

LICENSE.md

NAMESPACE

NEWS.md R/getMap.R R/is.ped.R R/marker.R R/marker_allelematrix.R R/marker_attach.R R/marker_database.R R/marker_distribute.R R/marker_genomatrix.R R/marker_getattr.R R/marker_locusAttributes.R R/marker_print.R R/marker_properties.R R/marker_select.R R/marker_setattr.R R/marker_setattr_inplace.R R/marker_sort.R R/marker_transfer.R R/marker_utils.R R/mendelianCheck.R R/mergePed.R R/ped.R R/ped_basic.R R/ped_complex.R R/ped_connected.R R/ped_convert.R R/ped_founder-inbreeding.R R/ped_internal.R R/ped_labels.R R/ped_loops.R R/ped_mask.R R/ped_methods.R R/ped_modify.R R/ped_plot.R R/ped_sex.R R/ped_subgroups.R R/ped_utils.R R/pedtools-package.R R/plot_dag.R R/plot_internal.R R/randomPed.R R/readPed.R R/setMutmod.R R/utils.R R/writePed.R README.Rmd README.md

inst/CITATION

inst/WORDLIST

man/addAllele.Rd man/as.data.frame.ped.Rd man/as.matrix.ped.Rd man/as.ped.Rd man/as_kinship2_pedigree.Rd man/connectedComponents.Rd man/distributeMarkers.Rd man/famid.Rd

man/figures/README-example-1.png

man/figures/logo.png

man/founderInbreeding.Rd man/freqDatabase.Rd man/getAlleles.Rd man/getComponent.Rd man/getGenotypes.Rd man/getMap.Rd man/getSex.Rd man/inbreedingLoops.Rd man/internalplot.Rd man/is.marker.Rd man/is.ped.Rd man/locusAttributes.Rd man/marker.Rd man/marker_attach.Rd man/marker_getattr.Rd man/marker_inplace.Rd man/marker_prop.Rd man/marker_select.Rd man/marker_setattr.Rd man/maskPed.Rd man/mendelianCheck.Rd man/mergePed.Rd man/nMarkers.Rd man/newMarker.Rd man/newPed.Rd man/ped.Rd man/ped_basic.Rd man/ped_complex.Rd man/ped_internal.Rd man/ped_modify.Rd man/ped_subgroups.Rd man/ped_utils.Rd man/pedtools-package.Rd man/plot.ped.Rd man/plotPedList.Rd man/print.nucleus.Rd man/print.ped.Rd man/randomPed.Rd man/readPed.Rd man/relabel.Rd man/setMutmod.Rd man/setSNPs.Rd man/sortGenotypes.Rd man/transferMarkers.Rd man/validatePed.Rd man/writePed.Rd

pedtools.Rproj

tests/testthat.R tests/testthat/test-founder-inbreeding.R tests/testthat/test-marker-accessors.R tests/testthat/test-marker-allelematrix.R tests/testthat/test-marker-attach.R tests/testthat/test-marker-creation.R tests/testthat/test-marker-distribute.R tests/testthat/test-marker-locusattributes.R tests/testthat/test-marker-select.R tests/testthat/test-marker-transfer.R tests/testthat/test-marker-utils.R tests/testthat/test-mendelian-check.R tests/testthat/test-ped-basic.R tests/testthat/test-ped-creation.R tests/testthat/test-ped-loops.R tests/testthat/test-ped-mask.R tests/testthat/test-ped-modifications.R tests/testthat/test-ped-parts.R tests/testthat/test-ped-read.R tests/testthat/test-ped-relatives.R tests/testthat/test-ped-subsets.R tests/testthat/test-ped-utils.R tests/testthat/test-ped-various.R tests/testthat/test-ped-write.R tests/testthat/test-plots.R tests/testthat/test-singleton.R tests/testthat/test-utils.R vignettes/pedtools.Rmd

magnusdv/pedtools documentation built on April 9, 2024, 7:35 a.m.