R/delgbs.R

In malemay/delgbs: Detection of deletions and duplications from GBS data

#' delgbs: Detection of deletions and duplications from GBS data
#'
#' This package was designed to allow the detection of copy number
#' variation (CNV) from standard genotyping-by-sequencing (GBS) data. Developed
#' with populations of fast neutron mutants in mind, it compares the depth of
#' sequencing in discrete genomic windows between individuals, segments the
#' sequencing depth profiles to identify homozygous deletions, hemizygous
#' deletions, and duplications. The functions included in this package provide
#' the utilities needed for going from a set of BAM alignment files to a set
#' of CNVs as well as high-level plotting functions to allow visualizing the
#' output.
#'
#' @docType package
#' @name delgbs
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#' @importMethodsFrom BiocGenerics start end width
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