Files in mandymejia/ciftiTools
Tools for Reading, Writing, Viewing and Manipulating CIFTI Files
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/add_surf.R
R/apply_xifti.R
R/as.gifti.R
R/as.xifti.R
R/ciftiTools-package.R
R/ciftiTools.files.R
R/combine_xifti.R
R/convert_xifti.R
R/edit_mask_surf.R
R/even_vert_samp.R
R/expect_equal_xifti.R
R/fix_gifti_mwalls.R
R/fix_xifti.R
R/flatten_xifti.R
R/info_cifti.R
R/is.xifti.R
R/load_parc.R
R/load_surf.R
R/make_xifti.R
R/make_xifti_components.R
R/merge_xifti.R
R/move_mwall.R
R/newdata_xifti.R
R/onAttach.R
R/options.R
R/parc_utils.R
R/read_cifti.R
R/read_cifti_convert.R
R/read_cifti_flat.R
R/read_cifti_separate.R
R/read_surf.R
R/read_xifti2.R
R/remap_cifti.R
R/remap_gifti.R
R/remove_xifti.R
R/resample_cifti.R
R/resample_cifti_components.R
R/resample_cifti_from_template.R
R/resample_gifti.R
R/resample_surf.R
R/rotate_surf.R
R/rox_args_docs.R
R/scale_xifti.R
R/select_xifti.R
R/separate_cifti.R
R/set_names_xifti.R
R/smooth_cifti.R
R/smooth_gifti.R
R/surf_area.R
R/sysdata.rda
R/template_xifti.R
R/transform_xifti.R
R/utils.R
R/utils_color.R
R/utils_surf.R
R/utils_volume.R
R/utils_xifti.R
R/view_comp.R
R/view_surf.R
R/view_xifti.R
R/view_xifti_surface.R
R/view_xifti_volume.R
R/wb_cmd.R
R/write_cifti.R
R/write_cifti_from_separate.R
R/write_gifti.R
R/write_nifti.R
R/write_xifti2.R
README.Rmd
README.md
README_media/ciftiTools_summary.png
README_media/surf_tour.gif
README_media/vxs_lit.png
README_media/vxs_unlit.png
README_media/xifti_structure.png
ciftiTools.Rproj
codecov.yml
cran-comments.md
data-raw/make_data_and_sysdata.R
data-raw/template.func.gii
data-raw/template.surf.gii
inst/CITATION
inst/extdata/Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii
inst/extdata/Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii
inst/extdata/Conte69.MyelinAndCorrThickness.6k_fs_LR.dscalar.nii
inst/extdata/Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii
inst/extdata/Conte69.parcellations_VGD11b.6k_fs_LR.dlabel.nii
inst/extdata/MNI152_T1_2mm.nii.gz
inst/extdata/MNI152_T1_2mm_crop.nii.gz
inst/extdata/README
inst/extdata/S1200.L.inflated_MSMAll.32k_fs_LR.surf.gii
inst/extdata/S1200.L.midthickness_MSMAll.32k_fs_LR.surf.gii
inst/extdata/S1200.L.very_inflated_MSMAll.32k_fs_LR.surf.gii
inst/extdata/S1200.R.inflated_MSMAll.32k_fs_LR.surf.gii
inst/extdata/S1200.R.midthickness_MSMAll.32k_fs_LR.surf.gii
inst/extdata/S1200.R.very_inflated_MSMAll.32k_fs_LR.surf.gii
inst/extdata/ones.dscalar.nii
inst/extdata/ones_1k.dscalar.nii
inst/extdata/subcort_label_list.txt
man/ROI_brainstructures_Param_LR.Rd
man/ROY_BIG_BL.Rd
man/S3_Math.Rd
man/S3_Ops.Rd
man/S3_Summary.Rd
man/add_surf.Rd
man/all_integers.Rd
man/apply_parc.Rd
man/apply_xifti.Rd
man/area_original_Param.Rd
man/area_target_Param.Rd
man/as.matrix.xifti.Rd
man/as.metric_gifti.Rd
man/as.surf_gifti.Rd
man/as.xifti.Rd
man/assure_parc.Rd
man/boundary_mask_surf.Rd
man/brainstructures_Param_LR.Rd
man/brainstructures_Param_all.Rd
man/check_cifti_type.Rd
man/ciftiTools.Rd
man/ciftiTools.checkOption.Rd
man/ciftiTools.files.Rd
man/ciftiTools.getOption.Rd
man/ciftiTools.listOptions.Rd
man/ciftiTools.setOption.Rd
man/ciftiTools_msg.Rd
man/ciftiTools_warn.Rd
man/cifti_component_suffix.Rd
man/cifti_fname_Param.Rd
man/combine_xifti.Rd
man/confirm_wb_cmd_path.Rd
man/convert_xifti.Rd
man/coordlist_to_vol.Rd
man/crop_image.Rd
man/crop_vol.Rd
man/dim.xifti.Rd
man/dist_from_mask_surf.Rd
man/dot-onAttach.Rd
man/edit_mask_surf.Rd
man/even_vert_samp.Rd
man/expand_color_pal.Rd
man/expect_equal_xifti.Rd
man/faces_Param.Rd
man/fix_gifti_mwall.Rd
man/fix_xifti.Rd
man/flatten_xifti.Rd
man/format_path.Rd
man/get_cifti_extn.Rd
man/get_data_meta_from_cifti_xml.Rd
man/get_intn_meta_from_cifti_xml.Rd
man/get_kwargs.Rd
man/get_misc_meta_from_cifti_xml.Rd
man/get_wb_cmd_path.Rd
man/header_cifti.Rd
man/idx_Param.Rd
man/infer_resolution.Rd
man/info_cifti.Rd
man/is.3D_mask.Rd
man/is.cifti.Rd
man/is.fname.Rd
man/is.nummat.Rd
man/is.subcort_labs.Rd
man/is.surf.Rd
man/is.xifti.Rd
man/is.xifti_data.Rd
man/is.xifti_meta.Rd
man/labels_Description.Rd
man/load_parc.Rd
man/load_sub_parc.Rd
man/load_surf.Rd
man/make_color_pal.Rd
man/make_cortex.Rd
man/make_subcort.Rd
man/make_trans_mat.Rd
man/make_xifti.Rd
man/mask_Param_vertices.Rd
man/mask_surf.Rd
man/mask_with_boundary_surf.Rd
man/match_exactly.Rd
man/match_input.Rd
man/merge_kwargs.Rd
man/merge_xifti.Rd
man/move_from_mwall.Rd
man/move_to_mwall.Rd
man/ncol_xifti.Rd
man/newdata_xifti.Rd
man/nrow_xifti.Rd
man/original_fnames_Param_remapped.Rd
man/original_fnames_Param_resampled.Rd
man/pad_vol.Rd
man/parc_add_subcortex.Rd
man/parc_borders.Rd
man/parc_mean_mat.Rd
man/parc_vals_to_xifti.Rd
man/plot.surf.Rd
man/plot.xifti.Rd
man/radial_order_surf.Rd
man/read_cifti.Rd
man/read_cifti_convert.Rd
man/read_cifti_flat.Rd
man/read_cifti_separate.Rd
man/read_dir_Param_separated.Rd
man/read_surf.Rd
man/read_xifti2.Rd
man/remap_cifti.Rd
man/remap_cifti_wrapper.Rd
man/remap_gifti.Rd
man/remove_xifti.Rd
man/resamp_method_Param.Rd
man/resamp_res_Param_optional.Rd
man/resamp_res_Param_required.Rd
man/resample_cifti.Rd
man/resample_cifti_components.Rd
man/resample_cifti_default_fname.Rd
man/resample_cifti_from_template.Rd
man/resample_cifti_wrapper.Rd
man/resample_gifti.Rd
man/resample_surf.Rd
man/rgl_interactive_plots_Description.Rd
man/rgl_static_plots_Description.Rd
man/rotate_surf.Rd
man/run_wb_cmd.Rd
man/scale_xifti.Rd
man/select_xifti.Rd
man/separate_cifti.Rd
man/separate_cifti_files.Rd
man/separate_cifti_wrapper.Rd
man/set_names_xifti.Rd
man/smooth_cifti.Rd
man/smooth_gifti.Rd
man/substructure_table.Rd
man/summary.surf.Rd
man/summary.xifti.Rd
man/supported_intents.Rd
man/surfL_Param_optional.Rd
man/surfL_fname_Param.Rd
man/surfL_original_fname_Param.Rd
man/surfL_target_fname_Param.Rd
man/surfR_Param_optional.Rd
man/surfR_fname_Param.Rd
man/surfR_original_fname_Param.Rd
man/surfR_target_fname_Param.Rd
man/surf_area.Rd
man/surface_plot_Params.Rd
man/sys_path.Rd
man/template_xifti.Rd
man/transform_xifti.Rd
man/unmask_cortex.Rd
man/unmask_subcortex.Rd
man/unvec_vol.Rd
man/use_color_pal.Rd
man/verbose_Param_FALSE.Rd
man/verbose_Param_TRUE.Rd
man/vert_adjacency.Rd
man/vertices_Param.Rd
man/view_comp.Rd
man/view_surf.Rd
man/view_xifti.Rd
man/view_xifti.cbar.Rd
man/view_xifti.cleg.Rd
man/view_xifti.title.Rd
man/view_xifti_surface.Rd
man/view_xifti_surface.color.Rd
man/view_xifti_surface.draw_mesh.Rd
man/view_xifti_surface.draw_title.Rd
man/view_xifti_surface.mesh_val.Rd
man/view_xifti_surface.surf_hemi.Rd
man/view_xifti_volume.Rd
man/vox_locations.Rd
man/wb_path_request.Rd
man/welcome_msg.Rd
man/write_cifti.Rd
man/write_cifti_from_separate.Rd
man/write_dir_Param_generic.Rd
man/write_label_table.Rd
man/write_metric_gifti.Rd
man/write_spheres.Rd
man/write_subcort_nifti.Rd
man/write_surf_gifti.Rd
man/write_xifti2.Rd
man/x_Param_xifti.Rd
man/xifti_Param.Rd
man/xml_cifti.Rd
tests/run_ciftiTools_tests.R
tests/testthat.R
tests/testthat/test-misc.R
tests/testthat/test-plotting_sub.R
tests/testthat/test-plotting_surf.R
tests/testthat/test-plotting_together.R
tests/testthat/test-reading.R
tests/testthat/test-resampling.R
tests/testthat/test-writing.R
vignettes/ciftiTools_vignette.Rmd
vignettes/ciftiTools_vignette.html
vignettes/output/.gitkeep
