README.md

In marchinilab/SDAtools: SDAtools: A toolkit for SDA

SDAtools: A toolkit for analysing SDA decompositions

This is a user friendly R package for facilitating the use of SDA, including data formatting, importing results and analysis.

Installation

# install.packages("remotes")
remotes::install_github("marchinilab/SDAtools")

Note that SDA itself must be downloaded and installed separately.

Quick Example Usage

library(SDAtools)

export_data(simulate_2D_data()$Y, name = "simulated.data")

run_SDA(data = "simulated.data", out = "simulation_results")

results <- load_results(results_folder = "simulation_results")

genome_loadings(results$loadings[[1]][8,])

For a full guide on how to use this package please see the vignette.

Contributions and comments of any size or form are welcome!

marchinilab/SDAtools documentation built on Jan. 31, 2020, 3:51 a.m.