R/gorthoR.R

#' Orthologs from gOrtholog database
#'
#' GorthoR provides tools to get orthologs, alignments and trees 
#' from gOrtholog database, an ortholog database at Genentech. 
#' More information about each function can be found in its help
#' documentation.
#'
#' GetOrthologs -
#' Find orthologs in other species, given gene/protein IDs.
#' 
#' GetAllOrthologs -
#' Get all orthologs in given species by taxonomy IDs.
#' 
#' GetClusterId - 
#' Find orthologous cluster given gene/protein IDs.
#' 
#' GetAlignment - 
#' Retrieve alignment of the given gene/protein and its orthologs
#' 
#' GetTree - 
#' Retrieve tree of the given gene/protein and its orthologs
#' 
#' @references TBD
#' @docType package
#' @name gorthoR
#' @author Mark J Chen \email{chenj99@@gene.com}
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markgene/gorthoR documentation built on May 21, 2019, noon