get_sample_sheet: Get sample sheet

Description Usage Arguments Details Value

View source: R/47_pipeline.R

Description

Get sample sheet for MAAP pipeline.

Usage

1
get_sample_sheet(maap, save_targets = TRUE)

Arguments

maap

A MAAP object

save_targets

A logical scalar if save targets of sample sheet

Details

If the sample sheet has "Basename" column, return it; otherwise, build a IDAT table and combine it with sample sheet through Sentrix_ID and Sentrix_Position column. See read_sample_sheet() and IdatTable class.

Value

A MAAP object (invisible)


markgene/sjmat documentation built on April 26, 2018, 4:13 p.m.