write_conumee_result: Output Conumee analysis result as table

Description Usage Arguments Value

View source: R/35_cnv.R

Description

Output Conumee analysis result as table

Usage

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write_conumee_result(cnv_anl, outdir, what = "segments", prefix = NULL,
  outfile = NULL)

Arguments

cnv_anl

A CNV.analysis object (single sample)

outdir

A character scalar of output directory

what

A character scalar. This should be (an unambiguous abbreviation of) one of 'probes', 'bins', 'detail' or 'segments'. Defaults to 'segments'.

prefix

A character scalar of output file prefix. Default is sample name. The output file name is the prefix + "-" + what argument + ".csv". For example, if sample name is "MA001" and what is "probes", the output file name will be "MA001-probes.csv".

outfile

A character scalar of output file name.

Value

A CNV.analysis object (invisible).


markgene/sjmat documentation built on April 26, 2018, 4:13 p.m.