CELLULOID: tumour cellularity and ploidy tool

Global functions | |
---|---|

ARloh | Man page Source code |

IGNOREplotModelPeaks | Source code |

RCC | Source code |

addLabels | Man page Source code |

addSomaticLabels | Source code |

addSomaticLabels_ALT | Source code |

annotateSegments | Man page Source code |

arInSeg | Man page Source code |

celluloid | Man page |

celluloid-package | Man page |

coverParamSpace | Man page Source code |

coverParamSpace.original | Source code |

coverParamSpace.percent | Source code |

ePeakPos | Man page Source code |

eSomaticPeakPos | Source code |

eg | Source code |

eoDist | Man page Source code |

eoDist.percent | Source code |

estimateLOHcurve | Man page Source code |

estimateLOHcurve_manual | Source code |

filterSym | Source code |

findEquiPeaks | Source code |

forcePeak | Source code |

gcCorrect | Man page Source code |

gcCorrect.normal | Source code |

gcCorrect.tumor | Source code |

getLocalMinsFromParamSpace | Source code |

getLocalSolutions | Man page Source code |

getSegments | Source code |

identifySegments | Source code |

intersectSegments | Man page Source code |

is.wholenumber | Source code |

makeTransparent | Source code |

matpat | Source code |

meanMapInSeg | Source code |

peakProximity | Man page Source code |

peakProximity.percent | Source code |

plotModelPeaks | Man page Source code |

plotSegment | Man page Source code |

plotSomaticModelPeaks | Source code |

prepAR | Man page Source code |

prepCN | Man page Source code |

prepCN.old | Source code |

prepCopyAr | Man page Source code |

prepSomaticCopyAr | Source code |

removePeaks | Man page Source code |

scaleReadCounts | Man page Source code |

scaleSegments | Man page Source code |

segmentAR | Man page Source code |

segmentSeqData | Man page Source code |

selectPeaks | Man page Source code |

showParamSpace | Source code |

showSTumourProfile | Source code Source code |

showTumourProfile | Man page Source code |

startOptim | Source code |

weight.linear | Source code |

weight.quadratic | Source code |

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