mctp/cnatools: Tools for Detection of Somatic and Germline Copy Number Aberrations from Targeted Next-Generation Sequencing Data
Version 0.0.9999

This R package jointly estimates tumor purity and somatic copy number across the genome, given a pair of tumor/normal samples sequenced using a targeted capture approach. It has been successfully used to analyze whole exome data as well as data from relatively large targeted panels (1500-1700 genes).

Getting started

Package details

Maintainer
LicenseMIT
Version0.0.9999
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("mctp/cnatools")
mctp/cnatools documentation built on May 22, 2017, 1:16 a.m.