API for mctp/cnatools
Tools for Detection of Somatic and Germline Copy Number Aberrations from Targeted Next-Generation Sequencing Data

Global functions
PAR_coords_hg19 Man page
add_gc_df Man page Source code
append_colors Man page Source code
append_covzyg_predictions Man page Source code
bed2df Man page Source code
cna_pipeline Man page Source code
compute_fit Man page Source code
coverage_only_segmentation Man page Source code
create.statelist Man page Source code
e.step Man page Source code
exclude_loci_hg19 Man page
filter_to_plausible_adjustments Man page Source code
fit_models Man page Source code
germline_classification Man page Source code
get.fb.lik Man page Source code
getFeatureCounts Man page Source code
get_chrinfo Man page Source code
get_classifications_from_models Man page Source code
get_gc Man page Source code
get_max_readlength Man page Source code
get_model_info Man page Source code
get_plotting_coords Man page Source code
get_quant_mx Man page Source code
get_summary_stats_from_classifications Source code
get_tc_lower_limit Man page Source code
infer_gender Man page Source code
initialize_adjustments Man page Source code
integrated_classification Man page Source code
integrated_segmentation Man page Source code
label_suspicious_adjustments Man page Source code
m.step Man page Source code
make_germline_zygosity_plot Man page Source code
merge_short_segments Man page Source code
models2fits Man page Source code
multiComputeCoverage Man page Source code
output_model_info Man page Source code
overall_classify Man page Source code
plot_copynumber Man page Source code
prepare_coverage_data Man page Source code
prepare_normal_pool Man page Source code
prepare_subread_annotation Man page Source code
restrict_to_het Man page Source code
vcf2zygosity Man page Source code
vcf_to_df Man page Source code
vcf_to_popfreq_df Man page Source code
mctp/cnatools documentation built on May 22, 2017, 1:16 a.m.