Man pages for mctp/cnatools
Tools for Detection of Somatic and Germline Copy Number Aberrations from Targeted Next-Generation Sequencing Data

add_gc_dfadd_gc_df
append_colorsappend_colors
append_covzyg_predictionsappend_covzyg_predictions
bed2dfbed2df
cna_pipelinecna_pipeline
compute_fitcompute_fit
coverage_only_segmentationcoverage_only_segmentation
create.statelistcreate.statelist
e.stepe.step
exclude_loci_hg19Loci to Exclude (hg19 coordinates)
filter_to_plausible_adjustmentsfilter_to_plausible_adjustments
fit_modelsfit_models
germline_classificationgermline_classification
get_chrinfoget_chrinfo
get_classifications_from_modelsget_classifications_from_models
get.fb.likget.fb.lik
getFeatureCountsgetFeatureCounts
get_gcget_gc
get_max_readlengthget_max_readlength
get_model_infoget_model_info
get_plotting_coordsget_plotting_coords
get_quant_mxget_quant_mx
get_tc_lower_limitget_tc_lower_limit
infer_genderinfer_gender
initialize_adjustmentsinitialize_adjustments
integrated_classificationintegrated_classification
integrated_segmentationintegrated_segmentation
label_suspicious_adjustmentslabel_suspicious_adjustments
make_germline_zygosity_plotmake_germline_zygosity_plot
merge_short_segmentsmerge_short_segments
models2fitsmodels2fits
m.stepm.step
multiComputeCoveragemultiComputeCoverage
output_model_infooutput_model_info
overall_classifyoverall_classify
PAR_coords_hg19Pseudo-Autosomal Regions (hg19 coordinates)
plot_copynumberplot_copynumber
prepare_coverage_dataprepare_coverage_data
prepare_normal_poolprepare_normal_pool
prepare_subread_annotationprepare_subread_annotation
restrict_to_hetrestrict_to_het
vcf2zygosityvcf2zygosity
vcf_to_dfvcf_to_df
vcf_to_popfreq_dfvcf_to_popfreq_df
mctp/cnatools documentation built on May 22, 2017, 1:16 a.m.