melinagallopin/testt: Construction and analysis of protein-protein interactions (PPI) networks for complexes and biological processes

This package is used to construct and analyse a network about PPI in cellular complexes or biological processes. There are functions to parse files, to construct network, to modelize assembly intermediary of complexes and to cluster network (TFit). Parse Databases : IrefIndex, Biogrid, Intact. Construct Thesaurus. Build Network. Analyse Network : Assembly intermediary + TFit clustering to find all interactants.

Getting started

Package details

AuthorMarie-Hélène Mucchielli-Giorgi <[email protected]> [aut], Marion Salé <[email protected]> [cre], Annie Glatigny [ctb]
MaintainerMarie-Hélène Mucchielli-Giorgi <[email protected]>
LicenseCC0
Version0.1.0
URL http://www.i2bc.paris-saclay.fr/?lang=en
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("melinagallopin/testt")
melinagallopin/testt documentation built on Aug. 18, 2018, 12:15 a.m.