mfansler/txcutr: Transcriptome CUTteR

Various mRNA sequencing library preparation methods generate sequencing reads specifically from the transcript ends. Analyses that focus on quantification of isoform usage from such data can be aided by using truncated versions of transcriptome annotations, both at the alignment or pseudo-alignment stage, as well as in downstream analysis. This package implements some convenience methods for readily generating such truncated annotations and their corresponding sequences.

Getting started

Package details

Bioconductor views Alignment Annotation RNASeq Sequencing Transcriptomics
Maintainer
LicenseGPL-3
Version0.99.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("mfansler/txcutr")
mfansler/txcutr documentation built on Dec. 21, 2021, 4:59 p.m.