microbiome/miaSim: Microbiome Data Simulation

Microbiome time series simulation with generalized Lotka-Volterra model, Self-Organized Instability (SOI), and other models. Hubbell's Neutral model is used to determine the abundance matrix. The resulting abundance matrix is applied to (Tree)SummarizedExperiment objects.

Getting started

Package details

Bioconductor views ATACSeq Coverage DNASeq Microbiome Network Sequencing Software
Maintainer
LicenseArtistic-2.0 | file LICENSE
Version1.9.1
URL https://github.com/microbiome/miaSim
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("microbiome/miaSim")
microbiome/miaSim documentation built on Jan. 30, 2024, 2:38 a.m.