API for microbiome/microbiome
Microbiome Analytics

Global functions
ab, Man page
abundances Man page Source code
aggregate_taxa Man page Source code
associate Man page Source code
atlas1006 Man page
baseline Man page Source code
beta.mean Source code
beta.pairs Source code
bimodality Man page Source code
bimodality_sarle Man page Source code
boxplot_abundance Man page Source code
bulla Source code
bwi Source code
camargo Source code
chunk_reorder Man page Source code
cmat2table Man page Source code
core Man page Source code
core_abundance Man page Source code
core_heatmap Man page Source code
core_lineplot Source code
core_matrix Man page Source code
core_members Man page Source code
correlation_divergence Source code
coverage Man page Source code
cross_correlate Man page
densityplot Man page Source code
dietswap Man page
divergence Man page Source code
diversities Man page Source code
diversities_help Source code
dominance Man page Source code
dominance_help Source code
estimate_stability Man page Source code
evar Source code
evenness Man page Source code
evenness_help Source code
filter_prevalent Man page
find_maxima Source code
find_minima Source code
find_optima Man page Source code
gini_simpson Source code
gktau Man page Source code
global Man page Source code
group_age Man page Source code
group_bmi Man page Source code
heat Man page Source code
hitchip.taxonomy Man page
hotplot Man page Source code
inequality Man page Source code
inequality_help Source code
intermediate_stability Man page Source code
inverse_simpson Source code
kurtosis Source code
log_modulo_skewness Man page Source code
low_abundance Man page Source code
map_levels Man page Source code
merge_taxa2 Man page Source code
meta Man page Source code
microbiome Man page
microbiome-package Man page
multimodality Man page Source code
neat Man page Source code
neatsort Man page Source code
noncore_abundance Man page Source code
noncore_members Man page Source code
onAttach Source code
otu Man page
peerj32 Man page
pickdata Source code
pielou Source code
plot_atlas Man page Source code
plot_composition Man page Source code
plot_core Man page Source code
plot_density Man page Source code
plot_frequencies Man page Source code
plot_landscape Man page Source code
plot_regression Man page Source code
plot_taxa_prevalence Man page Source code
plot_tipping Man page Source code
potential_analysis Man page Source code
potential_univariate Man page Source code
prevalence Man page Source code
prevalence_nsamples Source code
prevalent_taxa Man page
quiet Man page Source code
radial_theta Man page Source code
rare_members Man page Source code
rarity Man page Source code
rarity_help Source code
read_biom2phyloseq Man page Source code
read_csv2phyloseq Man page Source code
read_mothur2phyloseq Man page Source code
read_phyloseq Man page Source code
remove_obsolete_minima Source code
remove_samples Man page Source code
remove_taxa Man page Source code
richness Man page Source code
richness_help Source code
shannon Source code
simpson_dominance Source code
simpson_evenness Source code
simpson_index Source code
skew Source code
taxa Man page Source code
time_normalize Man page Source code
time_sort Man page Source code
top_taxa Man page Source code
transform Man page Source code
variable_members Man page Source code
write_phyloseq Man page Source code
ztransform Man page Source code
microbiome/microbiome documentation built on Nov. 9, 2017, 4:23 p.m.