API for microbiome/microbiome
Microbiome Analytics

Global functions
ab, Man page
abundances Man page Source code
aggregate_taxa Man page Source code
aggregate_top_taxa Man page Source code
alpha Man page Source code
associate Man page Source code
atlas1006 Man page
baseline Man page Source code
beta.mean Source code
beta.pairs Source code
bfratio Man page Source code
bimodality Man page Source code
bimodality_sarle Man page Source code
boxplot_abundance Man page Source code
bulla Source code
bwi Source code
camargo Source code
chao1 Source code
chao1_per_sample Source code
check_phyloseq Source code
chunk_reorder Man page Source code
cmat2table Man page Source code
collapse_replicates Man page Source code
core Man page Source code
core_abundance Man page Source code
core_heatmap Man page Source code
core_lineplot Source code
core_matrix Man page Source code
core_members Man page Source code
correlation_divergence Source code
coverage Man page Source code
cross_correlate Man page
default_colors Man page Source code
densityplot Man page Source code
dietswap Man page
divergence Man page Source code
diversities Man page Source code
diversities_help Source code
diversity Man page Source code
dominance Man page Source code
dominance_help Source code
dominant Man page Source code
estimate_stability Man page Source code
evar Source code
evenness Man page Source code
evenness_help Source code
filter_prevalent Man page
find_maxima Source code
find_minima Source code
find_optima Man page Source code
gini_simpson Source code
gktau Man page Source code
global Man page Source code
group_age Man page Source code
group_bmi Man page Source code
heat Man page Source code
hitchip.taxonomy Man page
hotplot Man page Source code
inequality Man page Source code
inequality_help Source code
intermediate_stability Man page Source code
inverse_simpson Source code
kurtosis Source code
log_modulo_skewness Man page Source code
low_abundance Man page Source code
map_levels Man page Source code
merge_taxa2 Man page Source code
meta Man page Source code
microbiome Man page
microbiome-package Man page
multimodality Man page Source code
neat Man page Source code
neatsort Man page Source code
noncore_abundance Man page Source code
noncore_members Man page Source code
onAttach Source code
otu Man page
peerj32 Man page
pickdata Source code
pielou Source code
plot_atlas Man page Source code
plot_composition Man page Source code
plot_core Man page Source code
plot_density Man page Source code
plot_frequencies Man page Source code
plot_landscape Man page Source code
plot_regression Man page Source code
plot_taxa_prevalence Man page Source code
plot_tipping Man page Source code
potential_analysis Man page Source code
potential_univariate Man page Source code
prevalence Man page Source code
prevalence_nsamples Source code
prevalent_taxa Man page
quiet Man page Source code
radial_theta Man page Source code
rare_members Man page Source code
rarity Man page Source code
rarity_help Source code
read_biom2phyloseq Man page Source code
read_csv2phyloseq Man page Source code
read_mothur2phyloseq Man page Source code
read_phyloseq Man page Source code
read_taxtable Source code
readcount Man page Source code
remove_obsolete_minima Source code
remove_samples Man page Source code
remove_taxa Man page Source code
richness Man page Source code
richness_help Source code
shannon Source code
simpson_dominance Source code
simpson_evenness Source code
simpson_index Source code
skew Source code
summarize_phyloseq Man page Source code
taxa Man page Source code
time_normalize Man page Source code
time_sort Man page Source code
timesplit Man page Source code
top_taxa Man page Source code
transform Man page Source code
variable_members Man page Source code
write_phyloseq Man page Source code
ztransform Man page Source code
microbiome/microbiome documentation built on Dec. 23, 2018, 11:59 a.m.