map_levels: Map Taxonomic Levels
In microbiome/microbiome: Microbiome Analytics

map_levels

R Documentation

Map Taxonomic Levels

Description

Map taxa between hierarchy levels.

Usage

map_levels(taxa = NULL, from, to, data)

Arguments

`taxa`	taxa to convert; if NULL then considering all taxa in the tax.table
`from`	convert from taxonomic level
`to`	convert to taxonomic level
`data`	Either a `phyloseq` object or its `taxonomyTable-class` , see the phyloseq package.

Value

mappings

Author(s)

Contact: Leo Lahti microbiome-admin@googlegroups.com

References

See citation('microbiome')

Examples

data(dietswap)
m <- map_levels('Akkermansia', from='Genus', to='Phylum',
tax_table(dietswap))
m <- map_levels('Verrucomicrobia', from='Phylum', to='Genus',
tax_table(dietswap))

microbiome/microbiome documentation built on Aug. 22, 2023, 7:12 a.m.