peerj32: Probiotics Intervention Data
In microbiome/microbiome: Microbiome Analytics
peerj32 R Documentation
Probiotics Intervention Data
Description
The peerj32 data set contains high-through profiling data from
389 human blood serum lipids and 130 intestinal genus-level bacteria from
44 samples (22 subjects from 2 time points; before and after
probiotic/placebo intervention). The data set can be used to investigate
associations between intestinal bacteria and host lipid metabolism.
For details, see http://dx.doi.org/10.7717/peerj.32.
Usage
data(peerj32)
Format
List of the following data matrices as described in detail in
Lahti et al. (2013):
lipids: Quantification of 389 blood serum lipids across 44 samples
microbes: Quantification of 130 genus-like taxa across 44 samples
meta: Sample metadata including time point, sex, subjectID,
sampleID and treatment group (probiotic LGG / Placebo)
phyloseq The microbiome data set converted into a
phyloseq-class object.
Value
Loads the data set in R.
Author(s)
Leo Lahti microbiome-admin@googlegroups.com
References
Lahti et al. (2013) PeerJ 1:e32
http://dx.doi.org/10.7717/peerj.32
microbiome/microbiome documentation built on Aug. 22, 2023, 7:12 a.m.
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| peerj32 | R Documentation |
Probiotics Intervention Data
Description
The peerj32 data set contains high-through profiling data from 389 human blood serum lipids and 130 intestinal genus-level bacteria from 44 samples (22 subjects from 2 time points; before and after probiotic/placebo intervention). The data set can be used to investigate associations between intestinal bacteria and host lipid metabolism. For details, see http://dx.doi.org/10.7717/peerj.32.
Usage
data(peerj32)
Format
List of the following data matrices as described in detail in Lahti et al. (2013):
lipids: Quantification of 389 blood serum lipids across 44 samples
microbes: Quantification of 130 genus-like taxa across 44 samples
meta: Sample metadata including time point, sex, subjectID, sampleID and treatment group (probiotic LGG / Placebo)
phyloseq The microbiome data set converted into a
phyloseq-classobject.
Value
Loads the data set in R.
Author(s)
Leo Lahti microbiome-admin@googlegroups.com
References
Lahti et al. (2013) PeerJ 1:e32 http://dx.doi.org/10.7717/peerj.32
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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