Man pages for millerh1/correlationAnalyzeR
Generate Novel Insights from Gene Correlation Data

analyzeGenePairsAnalyze Gene Pairs
analyzeGenesetTopologyAnalyze Gene List Topology
analyzeSingleGenesAnalyze Single Genes
blackListHumanA vector of blacklisted tissue-disease categories for human...
blackListMouseA vector of blacklisted tissue-disease categories for mouse...
fixStringsFix strings (helper function)
geneVsGeneListAnalyzeAnalyze gene vs gene list relationship
getAvailableGenesGet Available Genes
getCorrelationDataGet Gene Correlation Data
getTERM2GENEObtains TERM2GENE object for corGSEA
getTissueTPMGet TPM values for tissues and gene of interest
getTissueTypesGet available tissue types
hsapiens_corrSmall_geneNamesA vector of valid human genes to extract correlations from
humanGenesTPMA vector of valid human genes with TPM data available
mmusculus_corrSmall_geneNamesA vector of valid mouse genes to extract correlations from
mouseGenesTPMA vector of valid mouse genes with TPM data available
MSIGDB_Geneset_NamesA vector of valid MSIGDB geneset names
myGSEAWrapper for clusterProlifer's GSEA()
sampleTPMOrderHumanA vector containing the order of human samples in the...
sampleTPMOrderMouseA vector containing the order of mouse samples in the...
millerh1/correlationAnalyzeR documentation built on Nov. 7, 2019, 5:38 a.m.