getTissueTypes: Get available tissue types

Description Usage Arguments Value Examples

View source: R/getTissueTypes.R

Description

Finds tissue types with available correlation data for a given species

Usage

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getTissueTypes(Species = c("hsapiens", "mmusculus"),
  useBlackList = FALSE, pool = NULL)

Arguments

Species

Species to obtain tissue types for. Either 'hsapiens' or 'mmusculus'

useBlackList

Should black-listed tissue/disease categories for this species be removed from the returned list? Improves the quality of analysis by removing categories with low sample numbers and high observed variance.

pool

an object created by pool::dbPool to accessing SQL database. It will be created if not supplied.

Value

Vector containing available tissue types.

Examples

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correlationAnalyzeR::getTissueTypes("hsapiens")

millerh1/correlationAnalyzeR documentation built on Nov. 7, 2019, 5:38 a.m.