API for mmollina/polymap
Construction of Genetic Linkage Maps in Autopolyploids

Global functions
cache_counts_twopt Man page Source code
calc_genoprob Man page Source code
calc_genoprob_dist Man page Source code
calc_maps_load_and_trim_prin_curve Man page Source code
calc_nnfit Man page Source code
calc_nnfit_loci Man page Source code
check_pairwise Man page Source code
compare_haplotypes Man page Source code
concatenate_new_marker Man page Source code
create_map Man page Source code
dist_prob_to_class Man page Source code
draw_alleles Man page Source code
draw_cross Man page Source code
draw_homologous Man page Source code
draw_phases Man page Source code
drop_mrk Man page Source code
elim_conf_using_two_pts Man page Source code
elim_equiv Man page Source code
elim_redundant Man page Source code
est_pairwise_rf Man page Source code
est_rf_hmm Man page Source code
est_rf_hmm_sequential Man page Source code
est_rf_hmm_single Man page Source code
format_rf Man page Source code
generate_all_link_phase_elim_equivalent Man page Source code
get_LOD Man page Source code
get_cache_two_pts_from_web Man page Source code
get_counts Man page Source code
get_counts_all_phases Man page Source code
get_counts_one_parent Man page Source code
get_counts_two_parents Man page Source code
get_dist_loci Man page Source code
get_full_info_tail Man page Source code
get_ij Man page Source code
get_indices_from_selected_phases Man page Source code
get_nearest_informative Man page Source code
get_ph_conf_ret_sh Man page Source code
get_rf_from_list Man page Source code
get_rf_from_mat Man page Source code
get_submap Man page Source code
group_polymap Man page Source code
hexafake Man page
imf_h Man page Source code
imf_k Man page Source code
imf_m Man page Source code
ls_linkage_phases Man page Source code
make_mat_polymap Man page Source code
make_pairs_polymap Man page Source code
make_seq_polymap Man page Source code
mds_polymap Man page Source code
mean_dist_from_truth Man page Source code
mf_h Man page Source code
mf_k Man page Source code
mf_m Man page Source code
paralell_pairwise Man page Source code
perm_pars Man page Source code
perm_tot Man page Source code
ph_list_to_matrix Man page Source code
ph_matrix_to_list Man page Source code
plot.poly.est.two.pts.pairwise Source code
plot.polymap.data Source code
plot.polymap.group Source code
plot.polymap.map Source code
plot.polymap.mds Source code
plot.polymap.rf.matrix Source code
plot.polymap.unique.seq Source code
plot.two.pts.linkage.phases Source code
plot_compare_haplotypes Man page Source code
plot_diag_pc Man page Source code
plot_diag_pc_3d Man page Source code
poly_cross_simulate Man page Source code
poly_hmm_est Man page Source code
pos_twopt_est Man page Source code
print.cache.info Source code
print.poly.est.two.pts.pairwise Source code
print.polymap.data Man page Source code Source code
print.polymap.genoprob Source code
print.polymap.group Source code
print.polymap.map Source code
print.polymap.mds Source code
print.polymap.rf.matrix Source code
print.polymap.sequence Source code
print.polymap.unique.seq Source code
print.two.pts.linkage.phases Source code
print_mrk Man page Source code
read_geno Man page Source code
read_geno_dist Man page Source code
recalc_nnfit_from_map Man page Source code
reest_map Man page Source code
reest_map_geno_dist Man page Source code
rev_map Man page Source code
rf_list_to_matrix Man page Source code
rf_snp_filter Man page Source code
segreg_poly Man page Source code
select_rf Man page Source code
sim_cross_one_informative_parent Man page Source code
sim_cross_two_informative_parents Man page Source code
sim_homologous Man page Source code
mmollina/polymap documentation built on May 15, 2018, 7:21 p.m.