For more information on loom files, please see the documentation for loompy
A tutorial for loomR can be found here. A full function and method reference can be found here.
loomR aims to be completely compatible with loompy. Currently, loomR implements the following methods of the loompy API: - map/apply - create - connect - combine - subset - add layer - add attriute - add graph - add cells - add loom
loomR depends on: - R v3.4.x - The R6 package - The hdf5r package - The iterators package - The itertools package - The HDF5 C++ API
To get the HDF5 C++ API, please see the table below:
| Operating system | Command |
| ---------------- | ------- |
| macOS | Using Homebrew, brew install hdf5
|
| Debian and Debian-based OSes | sudo apt install libhdf5-dev
|
| Red Hat-based OSes | sudo dnf install hdf5-devel
or sudo yum install hdf5-devel
|
| Windows | Download precombiled binaries from Mario Annau here |
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