Files in montilab/hypeR
An R Package For Geneset Enrichment Workflows
.Rbuildignore
.github/workflows/build.yml
.gitignore
.travis.yml
DESCRIPTION
Dockerfile
LICENSE
NAMESPACE
NEWS.md
R/data.R
R/db_enrichr.R
R/db_hyper.R
R/db_msig.R
R/ggempty.R
R/ggeplot.R
R/ggvenn.R
R/gsets.R
R/hyp.R
R/hyp_dots.R
R/hyp_emap.R
R/hyp_hmap.R
R/hyp_show.R
R/hyp_to_excel.R
R/hyp_to_graph.R
R/hyp_to_rmd.R
R/hyp_to_table.R
R/hype.R
R/hyper_enrichment.R
R/ks_enrichment.R
R/multihyp.R
R/pvector.R
R/reactable.R
R/rgsets.R
R/shiny_modules.R
R/utils.R
README.Rmd
README.md
README_files/figure-gfm/unnamed-chunk-5-1.png
data-raw/data.R
data/limma.rda
data/wgcna.rda
inst/CITATION
inst/extdata/genesets.rds
inst/extdata/testdat.rds
inst/script/testdat.R
inst/style/rctbl.css
man/clean_genesets.Rd
man/dot-check_overlap.Rd
man/dot-dots_multi_plot.Rd
man/dot-dots_plot.Rd
man/dot-enrichment_map.Rd
man/dot-find_members.Rd
man/dot-format_str.Rd
man/dot-github_rds.Rd
man/dot-hexa.Rd
man/dot-hiearchy_map.Rd
man/dot-hyper_enrichment.Rd
man/dot-hyperdb_url.Rd
man/dot-jaccard_similarity.Rd
man/dot-ks_enrichment.Rd
man/dot-kstest.Rd
man/dot-overlap_similarity.Rd
man/dot-reverselog_trans.Rd
man/dot-string_args.Rd
man/enrichr_available.Rd
man/enrichr_connect.Rd
man/enrichr_download.Rd
man/enrichr_gsets.Rd
man/enrichr_urls.Rd
man/genesets_Server.Rd
man/genesets_UI.Rd
man/ggempty.Rd
man/ggeplot.Rd
man/ggvenn.Rd
man/gsets.Rd
man/hyp.Rd
man/hyp_dots.Rd
man/hyp_emap.Rd
man/hyp_hmap.Rd
man/hyp_show.Rd
man/hyp_to_excel.Rd
man/hyp_to_graph.Rd
man/hyp_to_rmd.Rd
man/hyp_to_table.Rd
man/hypeR.Rd
man/hyperdb_available.Rd
man/hyperdb_gsets.Rd
man/hyperdb_rgsets.Rd
man/limma.Rd
man/msigdb_available.Rd
man/msigdb_check_species.Rd
man/msigdb_download.Rd
man/msigdb_gsets.Rd
man/msigdb_info.Rd
man/msigdb_species.Rd
man/msigdb_version.Rd
man/multihyp.Rd
man/pvector.Rd
man/rctbl_build.Rd
man/rctbl_hyp.Rd
man/rctbl_mhyp.Rd
man/rgsets.Rd
man/wgcna.Rd
media/logo.png
pkgdown/_pkgdown.yml
pkgdown/extra.css
tests/testthat.R
tests/testthat/test-ggeplot.R
tests/testthat/test-ggvenn.R
tests/testthat/test-gsets.R
tests/testthat/test-hyp.R
tests/testthat/test-hyp_dots.R
tests/testthat/test-hyp_emap.R
tests/testthat/test-hyp_hmap.R
tests/testthat/test-hyp_show.R
tests/testthat/test-hyp_to_excel.R
tests/testthat/test-hyp_to_rmd.R
tests/testthat/test-hyp_to_table.R
tests/testthat/test-hype.R
tests/testthat/test-multihyp.R
tests/testthat/test-pvector.R
tests/testthat/test-rgsets.R
vignettes/docs/basics.Rmd
vignettes/docs/data.Rmd
vignettes/docs/fgsea.Rmd
vignettes/docs/hierarchy.Rmd
vignettes/docs/installation.Rmd
vignettes/docs/multihyp.Rmd
vignettes/docs/reporting.Rmd
vignettes/docs/shiny.Rmd
vignettes/docs/visualize.Rmd
vignettes/hypeR.Rmd
