protProfileSummary: ================================================================...

Description Usage Arguments

View source: R/protProfileSummary.R

Description

================================================================ protProfileSummary to calculate mean and SE for each channel in each prot using random effect model or arithmetic mean random effect model can avoid dominance of a sequence with too many spectra

Usage

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protProfileSummary(
  protsCombineCnew,
  outlier,
  refCol,
  nCol,
  eps,
  dataUse,
  save.data = TRUE
)

Arguments

protsCombineCnew:

a matrix of numbers

outlier:

outlier-removing method: 1)boxplot, 2)score, 3)none

refCol:

number of columns before Mass Spectrometry data columns

nCol:

how many columns in MS data

eps:

epsilon to avoid log(0)

dataUse:

name of data set

save.data:

save output data externally?


mooredf22/protsummarize2 documentation built on Nov. 21, 2020, 7:41 p.m.