mponichtera/oncopathr: Optimal expression cutpoints for KM-plots with TCGA and KEGG data.
Version 0.1.0

Intergrate and wrapps parts of cgdsr and keggrest. Streamlines expression data acqusition from TCGA via cBioPortal API, based on biological pathway annotated by KEGG. Uses refactored Logrank function to establish statistically significant cutpoints from Cutoff Finder Web Application Budczies J et al. (2012) doi.org/10.1371/journal.pone.0051862

Getting started

Package details

AuthorMikolaj Ponichtera
MaintainerMikolaj Ponichtera <[email protected]>
LicenseNA
Version0.1.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("mponichtera/oncopathr")
mponichtera/oncopathr documentation built on Feb. 23, 2018, 12:11 a.m.