Files in mrecos/klrfome
Kernel Logistic Regression with Focal Mean Embeddings
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgcheck.yaml
.github/workflows/r.yml
.gitignore
CONDUCT.md
CONTRIBUTING.md
DESCRIPTION
Dockerfile
JOSS/paper.bib
JOSS/paper.html
JOSS/paper.md
LICENSE
NAMESPACE
NEWS
R/KLR_funs.R
R/format_site_data.R
R/get_sim_data.R
R/metrics.R
R/plot.R
R/raster_predict_funs.R
README.R
README.Rmd
README.md
README_images/KLRfome_dataflow.png
README_images/KLRfome_prediction.png
README_images/README-fit_model-1.png
README_images/README-fit_model-2.png
README_images/README-multi-proc-1.png
README_images/README-predict_rasters-1.png
README_images/README-predict_rasters-2.png
README_images/README-sim_data-1.png
README_images/README-sim_data-2.png
SAA_2018_poster/Harris_SAA2018_poster.pdf
SAA_2018_poster/SAA_2018_poster.jpg
SAA_2018_poster/SAA_2018_poster_small.jpg
analysis/Stan_models/KRR_stan.stan
analysis/Stan_models/LMERR_lambda_stan.stan
analysis/Stan_models/LMERR_stan.stan
analysis/Stan_models/LMERR_stan2.stan
analysis/data/DO-NOT-EDIT-ANY-FILES-IN-HERE-BY-HAND
analysis/figures/demo-1.png
analysis/figures/demo-2.png
analysis/images/KLR_map.jpg
analysis/paper/journal-of-archaeological-science.csl
analysis/paper/paper.Rmd
analysis/paper/paper.html
analysis/paper/references.bib
analysis/reference_papers/Bayesian_Approaches_to_Distribution_Regression_Law_etal_2018.pdf
analysis/reference_papers/Kernel_Embedding_of_Conditional_Distributions_Song_etal_2013.pdf
analysis/reference_papers/Kernel_Logistic_Regression_and_the_Import_Vector_Machine_Zhu_Hastie_2002.pdf
analysis/reference_papers/Learning Theory for Distribution Regression_Szabo_et_al_2016.pdf
analysis/reference_papers/Two_stage_sampled_learning_theory_on_distributions_Szabo_etal_2015.pdf
analysis/reference_papers/Who_Supported_Obama_in_2012_Ecological_Inference_Through_Distribution_Regression_Flaxman_etal_2015.pdf
analysis/scripts/1_Logistic Mean Embedding KRR - Train and Predict.R
analysis/scripts/2_Logistic Mean Embedding KRR - Train and Predict - Real Data.R
analysis/scripts/Compare_ROC_for_Models.R
analysis/scripts/LMERR_alpha_stan_fit_loop_alpha_plot.R
analysis/scripts/LMERR_repeated_loop_vars_lambda_sigma.R
analysis/scripts/LMERR_to_stan_sample_data.R
analysis/scripts/LR_compare_obs_to_site_mean.R
analysis/scripts/Loop_for_Lambda_and_sigma_grid.R
analysis/scripts/compare_mean_embedding_methods.R
analysis/scripts/plot_LR_compare_obs_to_site_mean.R
analysis/scripts/plot_model_compare_results.R
analysis/scripts/plot_positive_response_curves.R
analysis/scripts/plot_similarity_matricies.R
analysis/scripts/purr_map_model_compare.R
analysis/scripts/simulate_rasters_for_prediction.R
analysis/templates/template.Rmd
analysis/templates/template.docx
docs/CONDUCT.html
docs/CONTRIBUTING.html
docs/LICENSE-text.html
docs/articles/index.html
docs/articles/vignette_intro_and_example_workflow.html
docs/articles/vignette_intro_and_example_workflow_files/figure-html/fit_model-1.png
docs/articles/vignette_intro_and_example_workflow_files/figure-html/fit_model-2.png
docs/articles/vignette_intro_and_example_workflow_files/figure-html/multi-proc-1.png
docs/articles/vignette_intro_and_example_workflow_files/figure-html/predict_rasters-1.png
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/CM_quads.html
docs/reference/KLR.html
docs/reference/KLR_predict.html
docs/reference/KLR_predict_each.html
docs/reference/KLR_raster_predict.html
docs/reference/K_corrplot.html
docs/reference/build_K.html
docs/reference/cohens_kappa.html
docs/reference/crop_raster_collar.html
docs/reference/format_site_data.html
docs/reference/get_k.html
docs/reference/get_sim_data.html
docs/reference/index.html
docs/reference/make_quads.html
docs/reference/metrics.html
docs/reference/rescale_sim_raster.html
docs/reference/scale_prediction_rasters.html
docs/reference/sim_trend.html
docs/reference/split_raster_stack.html
docs/reference/tri_swap.html
hex_stickers/KLR_fome_hex2_large.jpeg
hex_stickers/KLR_fome_hex2_large.png
hex_stickers/KLR_fome_hex2_large.svg
hex_stickers/KLR_fome_hex2_large_BW.jpeg
hex_stickers/KLR_fome_hex2_large_BW.png
inst/doc/vignette_intro_and_example_workflow.R
inst/doc/vignette_intro_and_example_workflow.html
inst/doc/vignette_intro_and_example_workflow.rmd
klrfome_logo/KLR-black.eps
klrfome_logo/KLR-black.png
klrfome_logo/KLR-white.eps
klrfome_logo/KLR-white.png
man/CM_quads.Rd
man/KLR.Rd
man/KLR_predict.Rd
man/KLR_predict_each.Rd
man/KLR_raster_predict.Rd
man/K_corrplot.Rd
man/build_K.Rd
man/cohens_kappa.Rd
man/crop_raster_collar.Rd
man/format_site_data.Rd
man/get_k.Rd
man/get_sim_data.Rd
man/make_quads.Rd
man/metrics.Rd
man/rescale_sim_raster.Rd
man/scale_prediction_rasters.Rd
man/sim_trend.Rd
man/split_raster_stack.Rd
man/tri_swap.Rd
tests/testthat.R
tests/testthat/test_K_and_fit.R
tests/testthat/test_data_creation.R
tests/testthat/test_raster_surface_and_predict.R
vignettes/vignette_intro_and_example_workflow.rmd
