API for ms609/Tetrad
Comparison of Phylogenetic Trees Using Quartet and Split Measures
| Global functions | |
|---|---|
| .AddSlice | Man page |
| .CheckSize | Man page |
| .CheckSize.list | Man page |
| .CheckSize.multiPhylo | Man page |
| .CheckSize.phylo | Man page |
| .NormalizeStatus | Man page |
| .StatusToArray | Man page |
| .StatusToMatrix | Man page |
| AllPairsQuartetAgreement | Man page Source code |
| AllPairsQuartetDistance | Man page Source code |
| AllPairsTripletDistance | Man page Source code |
| AllQuartets | Man page |
| AllQuartets.numeric | Man page |
| AllQuartets.phylo | Man page |
| BipartitionPoints | Man page |
| BipartitionStatus | Man page |
| CompareBipartitions | Man page |
| CompareQuartets | Man page |
| CompareQuartetsMulti | Man page |
| CompareSplits | Man page |
| Distances | Man page |
| DoNotConflict | Man page |
| ExplicitlyAgree | Man page |
| ManyToManyQuartetAgreement | Man page |
| MarczewskiSteinhaus | Man page |
| OneToManyQuartetAgreement | Man page Source code |
| PairSharedQuartetStatus | Man page |
| PairSharedSplitStatus | Man page |
| PairsQuartetDistance | Man page Source code |
| PairsTripletDistance | Man page Source code |
| PlotQuartet | Man page |
| Quartet | Man page |
| Quartet-package | Man page |
| QuartetAgreement | Man page Source code |
| QuartetDistance | Man page Source code |
| QuartetDivergence | Man page |
| QuartetPoints | Man page |
| QuartetState | Man page |
| QuartetStates | Man page |
| QuartetStates.Splits | Man page |
| QuartetStates.list | Man page |
| QuartetStates.multiPhylo | Man page |
| QuartetStatus | Man page |
| RawSymmetricDifference | Man page |
| ResolvedQuartets | Man page |
| ResolvedTriplets | Man page |
| RobinsonFoulds | Man page Source code |
| SemiStrictJointAssertions | Man page |
| SharedBipartitionStatus | Man page |
| SharedQuartetStatus | Man page |
| SharedSplitStatus | Man page |
| SimilarityMetrics | Man page |
| SimilarityToReference | Man page Source code |
| SingleTreeQuartetAgreement | Man page |
| SplitPoints | Man page |
| SplitStatus | Man page |
| SteelPenny | Man page |
| StrictJointAssertions | Man page |
| SymmetricDifference | Man page |
| SymmetricDifferenceLineEnds | Man page |
| SymmetricDifferenceLines | Man page |
| TQAE | Man page |
| TQDist | Man page |
| TQFile | Man page |
| TripletDistance | Man page Source code |
| TwoListQuartetAgreement | Man page |
| ValidateQuartetFile | Man page |
| VisualizeQuartets | Man page |
| all_quartets | Source code |
| quartet_states | Source code |
| release_questions | Source code |
| sq_trees | Man page |
| tqdist_AllPairsQuartetAgreement | Man page Source code |
| tqdist_AllPairsQuartetAgreementChar | Man page Source code |
| tqdist_AllPairsQuartetAgreementEdge | Man page Source code |
| tqdist_AllPairsQuartetDistance | Man page Source code |
| tqdist_AllPairsQuartetDistanceChar | Man page Source code |
| tqdist_AllPairsQuartetDistanceEdge | Man page Source code |
| tqdist_AllPairsTripletDistance | Man page Source code |
| tqdist_OneToManyQuartetAgreement | Man page Source code |
| tqdist_OneToManyQuartetAgreementChar | Man page Source code |
| tqdist_OneToManyQuartetAgreementEdge | Man page Source code |
| tqdist_PairsQuartetDistance | Man page Source code |
| tqdist_PairsTripletDistance | Man page Source code |
| tqdist_QuartetAgreement | Man page Source code |
| tqdist_QuartetAgreementChar | Man page Source code |
| tqdist_QuartetAgreementEdge | Man page Source code |
| tqdist_QuartetDistance | Man page Source code |
| tqdist_TripletDistance | Man page Source code |
| which_index | Source code |
