Files in mskilab/bamUtils
Utility functions for manipulating BAMs

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/bamUtils.R README.md bamUtils-manual.pdf
data-raw/create_example_bam.sh
docs/authors.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
man/bam.cov.gr.Rd man/bam.cov.tile.Rd man/bamflag.Rd man/bamtag.Rd man/chunk.Rd man/count.clips.Rd man/countCigar.Rd man/get.mate.gr.Rd man/get.pairs.grl.Rd man/is.paired.end.Rd man/mafcount.Rd man/read.bam.Rd man/splice.cigar.Rd man/varbase.Rd man/varcount.Rd tests/testthat.R
tests/testthat/HCC1143.final.subset.bam
tests/testthat/HCC1143.final.subset.bam.bai
tests/testthat/HCC1143.final.subset.bw
tests/testthat/HCC1143BL.final.percent.bam
tests/testthat/HCC1143BL.final.percent.bam.bai
tests/testthat/bam_noindex.bam
tests/testthat/chr1_human_g1k_v37_decoy.subset.fasta
tests/testthat/chr1_human_g1k_v37_decoy.subset.fasta.fai
tests/testthat/chrom1.vcf
tests/testthat/fake_bam.txt
tests/testthat/foo.vcf
tests/testthat/new_header.vcf
tests/testthat/small.maf
tests/testthat/smallA4AD_BL.bam
tests/testthat/smallA4AD_BL.bam.bai
tests/testthat/smallA4AD_tum.bam
tests/testthat/smallA4AD_tum.bam.bai
tests/testthat/smallHCC1143BL.bam
tests/testthat/smallHCC1143BL.bam.bai
tests/testthat/smallHCC1143BL.filtered.MD.bam
tests/testthat/smallHCC1143BL.filtered.MD.bam.bai
tests/testthat/snv.annotated.A4AD.maf
tests/testthat/test_bamUtils_ops.R
mskilab/bamUtils documentation built on July 10, 2018, 8:43 a.m.