ChangeLog.md

In msuefishlab/shinyorthologs: Compare orthologs across species as a RShiny app

Version 1.1.0

Features

• Add better display of data on the "ortholog lookup" page
• Improve the searching functionality with postgres full text search
• Add fasta and expression data into database tables
• Add ability to lookup multiple genes to ortholog IDs at once
• Add ability to save genes to a list from the search page
• Add ranking to searches

Fixes

• Rename "gene page" to "ortholog lookup"
• Remove the "shiny app as an R package" setup, as it overcomplicates things
• Remove multiple sequence alignment
• Fix URL bookmarking on heatmap
• Fix bug with blank columns giving null search results
• Fix searching with special chars

Version 1.0.0

• Created postgres data loaders
• Allows searching on ortholog ID, description, gene symbol, dbxref
• Multiple sequence alignment with msaR
• Added FASTA download of all transcripts in ortholog group
• Loaded genes with gene symbols, descriptions and dbxrefs
• Gene expression and heatmap viewer
• Allow editing ortholog relationships
• Use config file in JSON format

msuefishlab/shinyorthologs documentation built on May 23, 2019, 8:17 a.m.