R/data.R

In mvogel78/childsds: Data and Methods Around Reference Values in Pediatrics

#' LMS Parameters for the Centers for Disease Control and Prevention
#' 2000 Growth Charts, contains bmi, height, head cirumference, weight,
#' weight for length, 
#' @name cdc.ref
#' @docType data
#' @usage cdc.ref
#' @source National health statitics reports 63.
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#' LMS Parameters for German reference data (KiGGS, 2003-2006)
#' for height, weight, bmi, hip, whr, whtr, bodyfat, skinfold sum, triceps
#' skinfold, subscapular skinfold, and waist circumference
#' @name kiggs.ref 
#' @docType data
#' @usage kiggs.ref
#' @source Referenzperzentile fuer anthropometrische Masszahlen und Blutdruck aus KiGGS 2003-2006, Robert Koch Institut, Germany
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#' LMS Parameters for German reference data (Kromeyer Hauschild, 2001)
#' for height, weight, bmi, and waist circumference, including preterm
#' correction (Voigt)
#' @name kro.ref
#' @docType data
#' @usage kro.ref
#' @source Perzentile fuer den Body-mass-Index fuer das Kindes- und Jugendalter unter Heranziehung verschiedener deutscher Stichproben, Monatsschrift Kinderheilkunde August 2001, Volume 149, Issue 8, pp 807-818; Fruehgeborenenkorrektur nach Voigt
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#' LMS Parameters for UK-WHO growth charts for height,
#' weight, bmi, head circumference
#' @name ukwho.ref
#' @docType data
#' @usage ukwho.ref
#' @source Wright, Charlotte M., et a,Practice pointer: Using the new UK-WHO growth charts. British Medical Journal 340.c1140 (2010): 647-650.Preterm British 1990, 0-4 WHO2006, 4-18 British1990
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#' LMS Parameters for UK-WHO growth charts for height, weight, bmi,
#' head circumference,arm mid upper arm circumference, subscapular
#' and triceps skinfold, weight for height
#' @name who.ref
#' @docType data
#' @usage who.ref
#' @source de Onis, M., Onyango, A., Borghi, E., Siyam, A., Blossner, M., & Lutter, C. (2012). Worldwide implementation of the WHO child growth standards. Public Health Nutr, 12, 1-8.
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#' Parameters for iron-related blood parameters in children
#' @name iron.ref
#' @docType data
#' @usage iron.ref
#' @source Rieger, K. et al. Reference intervals for iron-related blood parameters: results from a population-based cohort study (LIFE Child). LaboratoriumsMedizin 40, (2016).
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#' Parameters for serum lipids in children
#' @name lipids.ref
#' @docType data
#' @usage lipids.ref
#' @source Dathan-Stumpf, A. et al. Pediatric reference data of serum lipids and prevalence of dyslipidemia: Results from a population-based cohort in Germany. Clinical Biochemistry 49, 740--749 (2016).
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#' Parameters derived from Turkish children
#' @name turkish.ref
#' @docType data
#' @usage turkish.ref
#' @source Hatipoglu, N. et al. Waist circumference percentiles for 7- to 17-year-old Turkish children and adolescents. Eur J Pediatr 167, 383--389 (2008);Bundak, R. et al. Body mass index references for Turkish children. Acta Pædiatrica 95, 194--198 (2006).
#' @source Neyzi, O., Furman, A., Bundak, R., Gunoz, H., Darendeliler, F., Bas, F., 2006. Growth references for Turkish children aged 6 to 18 years. Acta Pædiatrica 95, 1635–1641. doi:10.1080/08035250600652013
#' @source Bundak, R. et al. Body mass index references for Turkish children. Acta Paediatrica 95, 194-198 (2006).
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#' Parameters derived from Japanese children
#' @name japanese.ref
#' @docType data
#' @usage japanese.ref
#' @source Inokuchi, M., Matsuo, N., Anzo, M., Takayama, J. I. & Hasegawa, T. Age-dependent percentile for waist circumference for Japanese children based on the 1992--1994 cross-sectional national survey data. Eur J Pediatr 166, 655--661 (2007)
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#' Parameters derived from US children (additional to the cdc.ref)
#' @name us.ref
#' @docType data
#' @usage us.ref
#' @source Sharma, A. K., Metzger, D. L., Daymont, C., Hadjiyannakis, S. & Rodd, C. J. LMS tables for waist-circumference and waist-height ratio Z-scores in children aged 5-19 y in NHANES III: association with cardio-metabolic risks. Pediatric research (2015)
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#' Parameters derived from Saudi children
#' @name saudi.ref
#' @docType data
#' @usage saudi.ref
#' @source Mouzan, M. I. E., Salloum, A. A. A., Alqurashi, M. M., Herbish, A. S. A. & Omar, A. A. The LMS and Z scale growth reference for Saudi school-age children and adolescents. Saudi Journal of Gastroenterology 22, 331 (2016)
#' @source Shaik, S.A., El Mouzan, M.I., AlSalloum, A.A., AlHerbish, A.S., 2016. Growth reference for Saudi preschool children: LMS parameters and percentiles. Ann Saudi Med 36, 2–6. doi:10.5144/0256-4947.2016.2
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#' Parameters derived Ethiopian children
#' @name ethiop.ref
#' @docType data
#' @usage ehtiop.ref
#' @source Amare, E. B. et al. Reference Ranges for Head Circumference in Ethiopian Children 0--2 Years of Age. World Neurosurgery 84, 1566--1571.e2 (2015).
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#' Parameters derived from Portuguese children
#' @name portug.ref
#' @docType data
#' @usage portug.ref
#' @source Chaves, R., Baxter-Jones, A., Souza, M., Santos, D. & Maia, J. Height, weight, body composition, and waist circumference references for 7-to 17-year-old children from rural Portugal. HOMO-Journal of Comparative Human Biology 66, 264--277 (2015).
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#' Parameters derived from Italian children
#' @name italian.ref
#' @docType data
#' @usage italian.ref
#' @source Cacciari E, Milani S, Balsamo A, Spada E, Bona G, Cavallo L, et al. Italian cross-sectional growth charts for height, weight and BMI (2 to 20 yr). J Endocrinol Invest. 2006 Jul 1;29(7):581--93.
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#' Parameters derived from the 4th Dutch growth study
#' @name nl4.ref
#' @docType data
#' @usage nl4.ref
#' @source Fredriks, A. M. et al. Nationwide age references for sitting height, leg length, and sitting height/height ratio, and their diagnostic value for disproportionate growth disorders. Archives of Disease in Childhood 90, 807--812 (2005);
#' Fredriks, A. M. et al. Height, weight, body mass index and pubertal development references for children of Moroccan origin in The Netherlands. Acta Paediatr. 93, 817--824 (2004);
#' Fredriks, A. M. et al. Continuing positive secular growth change in The Netherlands 1955--1997. Pediatric research 47, 316--323 (2000);
#' Fredriks, A. M. et al. Height, weight, body mass index and pubertal development reference values for children of Turkish origin in the Netherlands. Eur. J. Pediatr. 162, 788--793 (2003); Fredriks, A. M., van Buuren, S., Wit, J. M. & Verloove-Vanhorick, S. P. Body index measurements in 1996--7 compared with 1980. Archives of disease in childhood 82, 107--112 (2000);
#' R package: AGD, Stef van Buuren, http://www.stefvanbuuren.nl/
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#' Parameters derived from Dutch children (additional to nl4.ref)
#' @name fredriks05.ref
#' @docType data
#' @usage fredriks05.ref
#' @source Fredriks, A. M. et al. Nationwide age references for sitting height, leg length, and sitting height/height ratio, and their diagnostic value for disproportionate growth disorders. Archives of Disease in Childhood 90, 807--812 (2005)
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#' Parameters derived from Chinese children (additional to nl4.ref)
#' @name zong13.ref
#' @docType data
#' @usage zong13.ref
#' @source Zong, X.-N., Li, H. Construction of a New Growth References for China Based on Urban Chinese Children: Comparison with the WHO Growth Standards. PLOS ONE 8, e59569 (2013).
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#' Parameters derived from the German KiGGS cohort
#' @name kiggs_bp.ref
#' @docType data
#' @usage kiggs_bp.ref
#' @details contains 2-dimensional reference grid. Do not use with \code{\link{sds}} but \code{\link{sds_2d}}
#' @source Neuhauser, H. K., Thamm, M., Ellert, U., Hense, H. W. & Rosario, A. S. Blood Pressure Percentiles by Age and Height from Nonoverweight Children and Adolescents in Germany. Pediatrics peds.2010-1290 (2011). doi:10.1542/peds.2010-1290.
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#' Parameters derived from Flandern population
#' @name belgium.ref
#' @docType data
#' @usage belgium.ref
#' @source Roelants M, Hauspie R, Hoppenbrouwers K. References for growth and pubertal development from birth to 21 years in Flanders, Belgium. Annals of Human Biology. 2009 Dezember;36(6):680–94.
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#' Parameters of skinfold measures derived from Colombian population 
#' @name colombia_sf.ref
#' @docType data
#' @usage colombia_sf.ref
#' @source Ramírez-Vélez, R. et al. Triceps and Subscapular Skinfold Thickness Percentiles and Cut-Offs for Overweight and Obesity in a Population-Based Sample of Schoolchildren and Adolescents in Bogota, Colombia. Nutrients 8, (2016).
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#' Parameters of skinfold measures derived from Colombian population 
#' @name who2007.ref
#' @docType data
#' @usage who2007.ref
#' @source Onis, M. de, Onyango, A.W., Borghi, E., Siyam, A., Nishida, C., Siekmann, J., 2007. Development of a WHO growth reference for school-aged children and adolescents. Bulletin of the World health Organization 85, 660–667.
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#' Parameters of skinfold measures derived from Colombian population 
#' @name nl3.ref
#' @docType data
#' @usage nl3.ref
#' @source Fredriks, A. M. et al. Continuing positive secular growth change in The Netherlands 1955–1997. Pediatric research 47, 316–323 (2000).
#' @source Fredriks, A.M., van Buuren, S., Wit, J.M., Verloove-Vanhorick, S.P., 2000. Body index measurements in 1996–7 compared with 1980. Archives of disease in childhood 82, 107–112.
#' @source https://cran.r-project.org/package=AGD
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#' Parameters of serum insulin-like growth factor-I (IGF-I) 
#' @name japan_lab.ref
#' @docType data
#' @usage japan_lab.ref
#' @source Isojima, T., Shimatsu, A., Yokoya, S., Chihara, K., Tanaka, T., Hizuka, N., Teramoto, A., Tatsumi, K., Tachibana, K., Katsumata, N., Horikawa, R., 2012. Standardized centile curves and reference intervals of serum insulin-like growth factor-I (IGF-I) levels in a normal Japanese population using the LMS method. Endocrine Journal 59, 771–780. doi:10.1507/endocrj.EJ12-0110
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#' International Laboratory Parameters Tables
#' @name international_lab.ref
#' @docType data
#' @usage international_lab.ref
#' @source Bidlingmaier, M., Friedrich, N., Emeny, R.T., Spranger, J., Wolthers, O.D., Roswall, J., Körner, A., Obermayer-Pietsch, B., Hübener, C., Dahlgren, J., others, 2014. Reference intervals for insulin-like growth factor-1 (IGF-I) from birth to senescence: results from a multicenter study using a new automated chemiluminescence IGF-I immunoassay conforming to recent international recommendations. The Journal of Clinical Endocrinology & Metabolism 99, 1712–1721.
#' @source Friedrich, N., Wolthers, O.D., Arafat, A.M., Emeny, R.T., Spranger, J., Roswall, J., Kratzsch, J., Grabe, H.J., Hübener, C., Pfeiffer, A.F.H., Döring, A., Bielohuby, M., Dahlgren, J., Frystyk, J., Wallaschofski, H., Bidlingmaier, M., 2014. Age- and Sex-Specific Reference Intervals Across Life Span for Insulin-Like Growth Factor Binding Protein 3 (IGFBP-3) and the IGF-I to IGFBP-3 Ratio Measured by New Automated Chemiluminescence Assays. The Journal of Clinical Endocrinology & Metabolism 99, 1675–1686. doi:10.1210/jc.2013-3060
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#' Parameters Preterm and  Intrauterine
#' @name preterm.ref
#' @docType data
#' @usage preterm.ref
#' @source Olsen, I.E., Lawson, M.L., Ferguson, A.N., Cantrell, R., Grabich, S.C., Zemel, B.S., Clark, R.H., 2015. BMI Curves for Preterm Infants. PEDIATRICS 135, e572–e581. doi:10.1542/peds.2014-2777
#' @source Olsen, I.E., Groveman, S.A., Lawson, M.L., Clark, R.H., Zemel, B.S., 2010. New intrauterine growth curves based on United States data. Pediatrics 125, e214-224. doi:10.1542/peds.2009-0913
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#' Parameters for serum liver enzymes
#' @name life_liver.ref
#' @docType data
#' @usage life_liver.ref
#' @source Bussler et al, New pediatric percentiles of liver enzyme serum levels (ALT, AST, GGT): effects of age, sex, BMI and pubertal stage, Hepatology 2017
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#' Parameters from the 1990 UK growth study
#' @name uk1990.ref
#' @docType data
#' @usage uk1990.ref
#' @source Cole, T.J., Freeman, J.V., Preece, M.A., 1998. British 1990 growth reference centiles for weight, height, body mass index and head circumference fitted by maximum penalized likelihood. Statistics in medicine 17, 407–429.
#' @source Cole, T.J., Freeman, J.V., Preece, M.A., 1995. Body mass index reference curves for the UK, 1990. Archives of disease in childhood 73, 25–29.
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