README.md
In nampho2/xwas: X-Wide Association Analyses

xwas

X-Wide Association Analysis (XWAS) is an R-package.

TODO

sample data files: HIV
add introspection to detect data types
script to collect results — use https://github.com/dgrtwo/broom
add in support for fixed effect/random effect meta analyses
correlation heatmap
get to work with HIV dataset
repeated measures

End-users

Currently install directly from the Github repository using devtools, future support for CRAN installation forthcoming.

# install directly from Github
> library(devtools)
> devtools::install_github("nampho2/xwas")
Downloading GitHub repo nampho2/xwas@master

Developers

Make sure to set R_LIBS="~/.R_libs" within a .Renviron file within your home directory. Also make sure the ~/.R_libs folder exists to house personal packages distinct from the system set of R libraries.

# build, check, and install
xwas$ make deploy

# test the code
xwas$ R
> library(xwas)
>

# commit changes and push to kick off travis build
xwas$ git add <list of files>
xwas$ git commit -m "description of changes"
xwas$ git push