Files in nanxstats/protr
Generating Various Numerical Representation Schemes for Protein Sequences
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.gitignore
CONDUCT.md
CONTRIBUTING.md
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/desc-01-AAC.R
R/desc-02-DC.R
R/desc-03-TC.R
R/desc-04-MoreauBroto.R
R/desc-05-Moran.R
R/desc-06-Geary.R
R/desc-07-CTDC.R
R/desc-07-CTDCClass.R
R/desc-08-CTDT.R
R/desc-08-CTDTClass.R
R/desc-09-CTDD.R
R/desc-09-CTDDClass.R
R/desc-10-CTriad.R
R/desc-10-CTriadClass.R
R/desc-11-SOCN.R
R/desc-12-QSO.R
R/desc-13-PAAC.R
R/desc-14-APAAC.R
R/desc-15-PSSM.R
R/desc-15-PSSMAcc.R
R/desc-15-PSSMFeature.R
R/misc-01-readFASTA.R
R/misc-02-readPDB.R
R/misc-03-protcheck.R
R/misc-04-protseg.R
R/misc-05-getUniProt.R
R/misc-06-acc.R
R/misc-07-removeGaps.R
R/par-01-parSeqSim.R
R/par-02-parGOSim.R
R/pcm-01-extractScales.R
R/pcm-01-extractScalesGap.R
R/pcm-02-extractDescScales.R
R/pcm-03-extractProtFP.R
R/pcm-03-extractProtFPGap.R
R/pcm-04-extractFAScales.R
R/pcm-05-extractMDSScales.R
R/pcm-06-extractBLOSUM.R
R/protr-datalist.R
R/protr-package.R
README.md
_pkgdown.yml
data/AA2DACOR.rda
data/AA3DMoRSE.rda
data/AAACF.rda
data/AABLOSUM100.rda
data/AABLOSUM45.rda
data/AABLOSUM50.rda
data/AABLOSUM62.rda
data/AABLOSUM80.rda
data/AABurden.rda
data/AACPSA.rda
data/AAConn.rda
data/AAConst.rda
data/AADescAll.rda
data/AAEdgeAdj.rda
data/AAEigIdx.rda
data/AAFGC.rda
data/AAGETAWAY.rda
data/AAGeom.rda
data/AAInfo.rda
data/AAMOE2D.rda
data/AAMOE3D.rda
data/AAMetaInfo.rda
data/AAMolProp.rda
data/AAPAM120.rda
data/AAPAM250.rda
data/AAPAM30.rda
data/AAPAM40.rda
data/AAPAM70.rda
data/AARDF.rda
data/AARandic.rda
data/AATopo.rda
data/AATopoChg.rda
data/AAWHIM.rda
data/AAWalk.rda
data/AAindex.rda
inst/CITATION
inst/logo/logo.R
inst/protseq/4HHB.pdb
inst/protseq/P00750.fasta
inst/protseq/P08218.fasta
inst/protseq/P10323.fasta
inst/protseq/P20160.fasta
inst/protseq/Plasminogen.fasta
inst/protseq/Q9NZP8.fasta
inst/protseq/align.fasta
inst/protseq/extracell.fasta
inst/protseq/mitochondrion.fasta
inst/sysdata/AAidx.csv
inst/sysdata/Grantham.csv
inst/sysdata/OptAA3d.sdf
inst/sysdata/Schneider-Wrede.csv
man/AA2DACOR.Rd
man/AA3DMoRSE.Rd
man/AAACF.Rd
man/AABLOSUM100.Rd
man/AABLOSUM45.Rd
man/AABLOSUM50.Rd
man/AABLOSUM62.Rd
man/AABLOSUM80.Rd
man/AABurden.Rd
man/AACPSA.Rd
man/AAConn.Rd
man/AAConst.Rd
man/AADescAll.Rd
man/AAEdgeAdj.Rd
man/AAEigIdx.Rd
man/AAFGC.Rd
man/AAGETAWAY.Rd
man/AAGeom.Rd
man/AAInfo.Rd
man/AAMOE2D.Rd
man/AAMOE3D.Rd
man/AAMetaInfo.Rd
man/AAMolProp.Rd
man/AAPAM120.Rd
man/AAPAM250.Rd
man/AAPAM30.Rd
man/AAPAM40.Rd
man/AAPAM70.Rd
man/AARDF.Rd
man/AARandic.Rd
man/AATopo.Rd
man/AATopoChg.Rd
man/AAWHIM.Rd
man/AAWalk.Rd
man/AAindex.Rd
man/ACC.Rd
man/OptAA3d.Rd
man/crossSetSim.Rd
man/crossSetSimDisk.Rd
man/extractAAC.Rd
man/extractAPAAC.Rd
man/extractBLOSUM.Rd
man/extractCTDC.Rd
man/extractCTDCClass.Rd
man/extractCTDD.Rd
man/extractCTDDClass.Rd
man/extractCTDT.Rd
man/extractCTDTClass.Rd
man/extractCTriad.Rd
man/extractCTriadClass.Rd
man/extractDC.Rd
man/extractDescScales.Rd
man/extractFAScales.Rd
man/extractGeary.Rd
man/extractMDSScales.Rd
man/extractMoran.Rd
man/extractMoreauBroto.Rd
man/extractPAAC.Rd
man/extractPSSM.Rd
man/extractPSSMAcc.Rd
man/extractPSSMFeature.Rd
man/extractProtFP.Rd
man/extractProtFPGap.Rd
man/extractQSO.Rd
man/extractSOCN.Rd
man/extractScales.Rd
man/extractScalesGap.Rd
man/extractTC.Rd
man/figures/logo.png
man/getUniProt.Rd
man/parGOSim.Rd
man/parSeqSim.Rd
man/parSeqSimDisk.Rd
man/protcheck.Rd
man/protr-package.Rd
man/protseg.Rd
man/readFASTA.Rd
man/readPDB.Rd
man/removeGaps.Rd
man/twoGOSim.Rd
man/twoSeqSim.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
protr.Rproj
vignettes/bioinformatics.csl
vignettes/custom.css
vignettes/figures/AAindex.png
vignettes/figures/APAAC.png
vignettes/figures/CTD.png
vignettes/figures/PAAC.png
vignettes/figures/QSO.png
vignettes/figures/ctriad.png
vignettes/figures/protrweb.png
vignettes/figures/roc.png
vignettes/protr.Rmd
vignettes/protr.bib
