API for natverse/nat
NeuroAnatomy Toolbox for Analysis of 3D Image Data
| Global functions | |
|---|---|
| *.neuronlist | Man page |
| +.neuronlist | Man page |
| -.neuronlist | Man page |
| .ParseAmirameshParameters | Source code |
| .checkLabel | Source code |
| .cygpath | Source code |
| .onAttach | Source code |
| .onLoad | Source code |
| .read.amiramesh.bin | Source code |
| .set_path_for_cygwin | Source code |
| .standardNrrdType | Source code |
| .verify_input_neuron | Source code |
| /.neuronlist | Man page |
| Cell07PNs | Man page |
| DirectPotentialSynapses | Source code |
| EdgeListFromSegList | Source code |
| MBL.surf | Man page |
| MakeStartEndList | Source code |
| Ops.dotprops | Man page Source code |
| Ops.hxsurf | Man page |
| Ops.mesh3d | Man page |
| Ops.neuron | Man page Source code |
| PotentialSynapses | Source code |
| PotentialSynapses.default | Source code |
| PotentialSynapses.dotprops | Source code |
| [.neuronlist | Man page |
| [.neuronlistfh | Man page |
| [<-.neuronlist | Man page |
| `*.neuronlist` | Source code |
| `+.neuronlist` | Source code |
| `-.neuronlist` | Source code |
| `/.neuronlist` | Source code |
| `boundingbox<-.default` | Source code |
| `boundingbox<-` | Source code |
| `c.hxsurf` | Source code |
| `data.frame<-.neuronlist` | Source code |
| `data.frame<-` | Source code |
| `materials<-.default` | Source code |
| `materials<-.hxsurf` | Source code |
| `materials<-` | Source code |
| `xyzmatrix<-.character` | Source code |
| `xyzmatrix<-.default` | Source code |
| `xyzmatrix<-.dotprops` | Source code |
| `xyzmatrix<-.hxsurf` | Source code |
| `xyzmatrix<-.igraph` | Source code |
| `xyzmatrix<-.list` | Source code |
| `xyzmatrix<-.neuron` | Source code |
| `xyzmatrix<-.neuronlist` | Source code |
| `xyzmatrix<-.shape3d` | Source code |
| `xyzmatrix<-` | Source code |
| affmat2cmtkparams | Man page Source code |
| all.equal.dotprops | Man page Source code |
| all.equal.im3d | Man page Source code |
| all.equal.neuron | Man page Source code |
| amiratype | Man page Source code |
| as.cmtkreg | Man page Source code |
| as.cmtkreg.default | Man page Source code |
| as.cmtkreg.matrix | Man page Source code |
| as.cmtkreg.reglist | Man page Source code |
| as.data.frame.morphml_cell | Source code |
| as.data.frame.neuronlist | Man page Source code |
| as.directed.usingroot | Source code |
| as.dotprops | Man page Source code |
| as.hxsurf | Man page Source code |
| as.hxsurf.mesh3d | Man page Source code |
| as.im3d | Man page Source code |
| as.im3d.im3d | Man page Source code |
| as.im3d.matrix | Man page Source code |
| as.list.neuronlistfh | Source code |
| as.list.neuronlistz | Source code |
| as.mesh3d | Man page |
| as.mesh3d.ashape3d | Man page Source code |
| as.mesh3d.boundingbox | Man page Source code |
| as.mesh3d.hxsurf | Man page Source code |
| as.neuron | Man page Source code |
| as.neuron.data.frame | Man page Source code |
| as.neuron.default | Man page Source code |
| as.neuron.igraph | Man page Source code |
| as.neuron.morphml_cell | Source code |
| as.neuron.neuron | Source code |
| as.neuron.ngraph | Man page Source code |
| as.neuronlist | Man page Source code |
| as.neuronlist.default | Man page Source code |
| as.neuronlist.neuronlistfh | Man page Source code |
| as.neuronlist.neuronlistz | Man page Source code |
| as.neuronlistfh | Man page Source code |
| as.neuronlistfh.neuronlist | Man page Source code |
| as.ngraph | Man page Source code |
| as.ngraph.data.frame | Man page Source code |
| as.ngraph.igraph | Source code |
| as.ngraph.morphml_cell | Source code |
| as.ngraph.neuron | Man page Source code |
| as.ngraph.ngraph | Source code |
| as.seglist | Man page Source code |
| as.seglist.default | Source code |
| as.seglist.igraph | Man page Source code |
| as.seglist.list | Source code |
| as.seglist.neuron | Man page Source code |
| as.seglist.seglist | Source code |
| boundingbox | Man page Source code |
| boundingbox.character | Man page Source code |
| boundingbox.default | Man page Source code |
| boundingbox.im3d | Man page Source code |
| boundingbox<- | Man page |
| branchpoints | Man page |
| branchpoints.default | Man page Source code |
| branchpoints.igraph | Man page Source code |
| branchpoints.neuron | Man page Source code |
| c.hxsurf | Man page |
| c.neuronlist | Man page Source code |
| c.neuronlistfh | Man page Source code |
| c.reglist | Man page Source code |
| check_plotengine | Source code |
| clampmax | Man page Source code |
| closest_ends | Source code |
| cmtk | Man page |
| cmtk.arg.name | Source code |
| cmtk.bindir | Man page Source code |
| cmtk.call | Man page Source code |
| cmtk.dof2mat | Man page Source code |
| cmtk.extract_affine | Man page Source code |
| cmtk.mat2dof | Man page Source code |
| cmtk.reformatx | Man page Source code |
| cmtk.statistics | Man page Source code |
| cmtk.streamxform | Source code |
| cmtk.system2 | Man page Source code |
| cmtk.targetvolume | Man page Source code |
| cmtk.targetvolume.character | Source code |
| cmtk.targetvolume.default | Man page Source code |
| cmtk.targetvolume.im3d | Man page Source code |
| cmtk.targetvolume.list | Man page Source code |
| cmtk.version | Man page Source code |
| cmtklandmarks | Source code |
| cmtkparams2affmat | Man page Source code |
| cmtkreg | Man page Source code |
| cmtkreg.filetype | Source code |
| cmtkreglist | Man page Source code |
| concat_hxsurfs | Source code |
| contains_points | Source code |
| contains_points.ashape3d | Source code |
| contains_points.boundingbox | Source code |
| contains_points.mesh3d | Source code |
| coord2ind | Man page Source code |
| coord2ind.default | Man page Source code |
| copy_nl_attributes | Source code |
| correct_root | Man page Source code |
| data.frame<- | Man page |
| data.frame<-.neuronlist | Man page |
| decode.rle | Source code |
| dfs_traversal | Source code |
| dim.im3d | Source code |
| dimnames.neuronlist | Source code |
| dist3D_Segment_to_Segment | Source code |
| distal_to | Man page Source code |
| dl1neuron | Man page |
| dotprod | Source code |
| dotprops | Man page Source code |
| dotprops.character | Man page Source code |
| dotprops.default | Man page Source code |
| dotprops.dotprops | Man page Source code |
| dotprops.im3d | Man page Source code |
| dotprops.list | Source code |
| dotprops.neuron | Man page Source code |
| dotprops.neuronlist | Man page Source code |
| dotprops2swc | Source code |
| droplevels | Man page |
| droplevels.neuronlist | Man page Source code |
| endpoints | Man page |
| endpoints.default | Man page Source code |
| endpoints.igraph | Man page Source code |
| endpoints.neuron | Man page Source code |
| facenormals | Source code |
| file.exists | Source code |
| fileformats | Man page Source code |
| fillMissing | Source code |
| find.neuron | Man page Source code |
| find.soma | Man page |
| flip | Man page Source code |
| flip.array | Man page Source code |
| flip.matrix | Source code |
| flip.vector | Source code |
| generic_magic_check | Source code |
| get_distance_to_soma | Man page Source code |
| get_topo_features | Man page Source code |
| getformatreader | Man page Source code |
| getformatwriter | Man page Source code |
| graph.nodes | Man page Source code |
| has_soma | Source code |
| head | Man page |
| head.neuronlist | Man page Source code |
| hxsurf | Man page |
| id2char | Source code |
| ijkpos | Man page Source code |
| im3d | Man page Source code |
| im3d-coords | Man page |
| im3d-io | Man page |
| im3d2nrrdheader | Source code |
| image.im3d | Man page Source code |
| imexpand.grid | Man page Source code |
| imscalebar | Man page Source code |
| imslice | Man page Source code |
| ind2coord | Man page Source code |
| ind2coord.array | Man page Source code |
| ind2coord.default | Man page Source code |
| ind2coord.im3d | Man page Source code |
| intersect | Man page Source code |
| intersect.default | Man page Source code |
| intersect.neuronlist | Man page Source code |
| intersect_plane | Man page Source code |
| intersect_plane.default | Man page Source code |
| intersect_plane.neuron | Man page Source code |
| invert_reglist | Man page Source code |
| is.amiramesh | Man page Source code |
| is.amiramesh.im3d | Source code |
| is.amiratype | Source code |
| is.cmtklandmarks | Source code |
| is.cmtkreg | Man page Source code |
| is.dotprops | Man page Source code |
| is.fijilandmarks | Source code |
| is.fijitraces | Man page Source code |
| is.im3d | Man page Source code |
| is.neuroml | Man page Source code |
| is.neuron | Man page Source code |
| is.neuronlist | Man page Source code |
| is.neuronlistfh | Man page Source code |
| is.nrrd | Man page Source code |
| is.ply | Source code |
| is.swc | Man page Source code |
| is.vaa3draw | Man page Source code |
| kcs20 | Man page |
| leafpath | Source code |
| listlengths | Source code |
| make_model | Man page Source code |
| makeboundingbox | Man page Source code |
| makecols | Source code |
| mask | Man page Source code |
| mask.im3d | Man page Source code |
| materials | Man page Source code |
| materials.character | Man page Source code |
| materials.default | Man page Source code |
| materials.hxsurf | Man page Source code |
| merge_nl_dataframes | Source code |
| mirror | Man page Source code |
| mirror.character | Man page Source code |
| mirror.default | Man page Source code |
| mirror.neuronlist | Man page Source code |
| nat | Man page |
| nat-package | Man page |
| nclear3d | Man page Source code |
| ndigest | Man page Source code |
| ndigest.default | Source code |
| ndigest.dotprops | Man page Source code |
| ndigest.neuron | Man page Source code |
| ndigest.neuronlistfh | Man page Source code |
| neuron | Man page Source code |
| neuronlist | Man page Source code |
| neuronlist-dataframe-methods | Man page |
| neuronlistfh | Man page Source code |
| neuronlistz | Man page Source code |
| ngraph | Man page Source code |
| nlapply | Man page |
| nlscan | Man page Source code |
| nmapply | Man page Source code |
| nopen3d | Man page Source code |
| normalise_swc | Man page Source code |
| normbyrow | Source code |
| npop3d | Man page Source code |
| nrrd.datafiles | Man page Source code |
| nrrd.voxdims | Man page Source code |
| nvertices | Man page Source code |
| nvertices.default | Man page Source code |
| nvertices.dotprops | Source code |
| nvertices.neuron | Source code |
| nvertices.neuronlist | Man page Source code |
| nvertices.shapelist3d | Man page |
| nview3d | Man page Source code |
| openplotlyscene | Source code |
| origin | Man page Source code |
| overlap_score | Man page Source code |
| pan3d | Man page Source code |
| parse.hxsurf.bin | Source code |
| plane_coefficients | Man page Source code |
| plot.dotprops | Man page Source code |
| plot.neuron | Man page Source code |
| plot.neuronlist | Man page Source code |
| plot3d | Man page |
| plot3d.boundingbox | Man page Source code |
| plot3d.character | Man page Source code |
| plot3d.cmtkreg | Man page Source code |
| plot3d.dotprops | Man page Source code |
| plot3d.hxsurf | Man page Source code |
| plot3d.neuron | Man page Source code |
| plot3d.neuronlist | Man page Source code |
| plot3d.ngraph | Man page Source code |
| pointsinside | Man page Source code |
| pointsinside.default | Man page Source code |
| potential_synapses | Man page Source code |
| potential_synapses.dotprops | Man page Source code |
| potential_synapses.neuron | Man page Source code |
| potential_synapses.neuronlist | Man page Source code |
| print.dotprops | Source code |
| print.neuron | Source code |
| print.neuronlist | Source code |
| print.neuronlistz | Source code |
| process_morphml_cell | Source code |
| progress_natprogress | Man page Source code |
| projection | Man page Source code |
| prune | Man page Source code |
| prune.default | Man page Source code |
| prune.dotprops | Man page Source code |
| prune.neuron | Man page Source code |
| prune.neuronlist | Man page Source code |
| prune_edges | Man page Source code |
| prune_edges_ng | Source code |
| prune_in_volume | Man page Source code |
| prune_in_volume.neuron | Man page Source code |
| prune_in_volume.neuronlist | Man page Source code |
| prune_online | Man page Source code |
| prune_online.neuron | Man page Source code |
| prune_online.neuronlist | Man page Source code |
| prune_strahler | Man page Source code |
| prune_twigs | Man page Source code |
| prune_twigs.neuron | Man page Source code |
| prune_twigs.neuronlist | Man page Source code |
| prune_vertices | Man page Source code |
| read.amiramesh | Man page Source code |
| read.amiramesh.ascii | Source code |
| read.amiramesh.header | Man page Source code |
| read.cmtk | Man page Source code |
| read.cmtkreg | Man page Source code |
| read.fijixml | Source code |
| read.hxsurf | Man page Source code |
| read.hxsurf.bin | Source code |
| read.im3d | Man page Source code |
| read.im3d.amiramesh | Source code |
| read.im3d.nrrd | Source code |
| read.im3d.vaa3draw | Source code |
| read.landmarks | Man page Source code |
| read.landmarks.amira | Source code |
| read.landmarks.cmtk | Source code |
| read.landmarks.fiji | Source code |
| read.morphml | Man page Source code |
| read.neuron | Man page Source code |
| read.neuron.fiji | Man page Source code |
| read.neuron.hxlineset | Source code |
| read.neuron.hxskel | Source code |
| read.neuron.mesh | Source code |
| read.neuron.neuroml | Man page Source code |
| read.neuron.swc | Man page Source code |
| read.neuronlistfh | Man page Source code |
| read.neurons | Man page Source code |
| read.ngraph.swc | Man page Source code |
| read.nrrd | Man page Source code |
| read.nrrd.header | Man page Source code |
| read.swc | Source code |
| read.vaa3draw | Man page Source code |
| read.zlib | Source code |
| readBrotli | Source code |
| read_from_zip | Source code |
| readqs | Source code |
| registerformat | Man page Source code |
| reglist | Man page Source code |
| remotesync | Man page Source code |
| remotesync.default | Source code |
| remotesync.neuronlistfh | Man page Source code |
| reroot | Man page Source code |
| reroot.neuron | Man page Source code |
| reroot.neuronlist | Man page Source code |
| resample | Man page Source code |
| resample.neuron | Man page Source code |
| resample.neuronlist | Man page Source code |
| resample_segment | Source code |
| restrictToBounds | Source code |
| robust_max | Source code |
| rootpoints | Man page |
| rootpoints.default | Man page Source code |
| rootpoints.igraph | Man page Source code |
| rootpoints.neuron | Man page Source code |
| rowbyrow | Source code |
| saveBrotli | Source code |
| saveqs | Source code |
| scale | Man page |
| scale.dotprops | Man page Source code |
| scale.neuron | Man page Source code |
| seglength | Source code |
| seglengths | Man page Source code |
| seglist | Man page Source code |
| seglist2df | Source code |
| seglist2swc | Man page Source code |
| segmentgraph | Man page Source code |
| select_points | Man page |
| setdiff | Man page Source code |
| setdiff.default | Man page Source code |
| setdiff.neuronlist | Man page Source code |
| sholl_analysis | Man page Source code |
| sholl_analysis.neuron | Man page Source code |
| sholl_analysis.neuronlist | Man page Source code |
| simplify_neuron | Man page Source code |
| simplify_reglist | Man page Source code |
| smooth_neuron | Man page Source code |
| smooth_segment_gauss | Man page Source code |
| smooth_segment_spline | Source code |
| spine | Man page Source code |
| stitch_neuron | Man page Source code |
| stitch_neurons | Man page Source code |
| stitch_neurons_mst | Man page Source code |
| strahler_order | Man page Source code |
| sub2ind | Man page Source code |
| subset | Man page |
| subset.dotprops | Man page Source code |
| subset.hxsurf | Man page Source code |
| subset.neuron | Man page Source code |
| subset.neuronlist | Man page Source code |
| summary | Man page |
| summary.dotprops | Man page Source code |
| summary.mesh3d | Man page Source code |
| summary.neuron | Man page Source code |
| summary.neuronlist | Man page Source code |
| swapped | Source code |
| tail | Man page |
| tail.neuronlist | Man page Source code |
| thetaBetween | Source code |
| threshold | Man page Source code |
| threshold.im3d | Man page Source code |
| topntail | Source code |
| topntail_list | Source code |
| total_cable | Source code |
| tpsreg | Man page Source code |
| union | Man page Source code |
| union.default | Man page Source code |
| union.neuronlist | Man page Source code |
| unlinktempfiles_reglist | Source code |
| unmask | Man page Source code |
| use_natcpp | Source code |
| voxdims | Man page Source code |
| voxdims.character | Man page Source code |
| voxdims.default | Man page Source code |
| voxdims.im3d | Man page Source code |
| wire3d | Man page Source code |
| wire3d.default | Source code |
| wire3d.hxsurf | Man page Source code |
| wire3d.mesh3d | Man page |
| wire3d.plotlymesh3d | Source code |
| wire3d.shapelist3d | Man page |
| with | Man page |
| with.neuronlist | Man page Source code |
| write.amiramesh | Man page Source code |
| write.cmtk | Man page Source code |
| write.cmtk.list | Source code |
| write.cmtkreg | Man page Source code |
| write.dotprops.swc | Source code |
| write.hxsurf | Man page Source code |
| write.im3d | Man page Source code |
| write.landmarks | Man page Source code |
| write.landmarks.amira | Source code |
| write.landmarks.cmtk | Source code |
| write.landmarks.fiji | Source code |
| write.neuron | Man page Source code |
| write.neuron.hxlineset | Source code |
| write.neuron.hxskel | Source code |
| write.neuron.mesh | Source code |
| write.neuron.obj | Source code |
| write.neuron.ply | Source code |
| write.neuron.swc | Source code |
| write.neuronlistfh | Man page Source code |
| write.neurons | Man page Source code |
| write.nrrd | Man page Source code |
| write.nrrd.header | Man page |
| write.nrrd.header.for.file | Man page Source code |
| write.vtk | Man page Source code |
| write.vtk.neuron | Man page Source code |
| write.zlib | Source code |
| xform | Man page Source code |
| xform.character | Man page Source code |
| xform.data.frame | Man page Source code |
| xform.default | Man page Source code |
| xform.dotprops | Man page Source code |
| xform.list | Man page Source code |
| xform.mesh3d | Man page |
| xform.neuron | Man page |
| xform.neuronlist | Man page Source code |
| xform.shape3d | Man page |
| xformimage | Man page Source code |
| xformimage.character | Man page Source code |
| xformimage.cmtkreg | Man page Source code |
| xformimage.default | Man page Source code |
| xformimage.reglist | Man page Source code |
| xformpoints | Man page Source code |
| xformpoints.character | Man page Source code |
| xformpoints.cmtkreg | Man page Source code |
| xformpoints.default | Man page Source code |
| xformpoints.reglist | Man page Source code |
| xformpoints.tpsreg | Man page Source code |
| xprodm | Source code |
| xyzmatrix | Man page Source code |
| xyzmatrix.character | Man page Source code |
| xyzmatrix.default | Man page Source code |
| xyzmatrix.dotprops | Man page Source code |
| xyzmatrix.hxsurf | Man page Source code |
| xyzmatrix.igraph | Man page Source code |
| xyzmatrix.list | Man page Source code |
| xyzmatrix.mesh3d | Man page Source code |
| xyzmatrix.neuron | Man page Source code |
| xyzmatrix.neuronlist | Man page Source code |
| xyzmatrix.shapelist3d | Man page |
| xyzmatrix2list | Man page Source code |
| xyzmatrix2str | Man page Source code |
| xyzmatrix<- | Man page |
| xyzmatrix<-.character | Man page |
| xyzmatrix<-.dotprops | Man page |
| xyzmatrix<-.hxsurf | Man page |
| xyzmatrix<-.igraph | Man page |
| xyzmatrix<-.mesh3d | Man page |
| xyzmatrix<-.neuron | Man page |
| xyzmatrix<-.neuronlist | Man page |
| xyzmatrix<-.shape3d | Man page |
| xyzmatrix<-.shapelist3d | Man page |
| xyzpos | Man page Source code |
