Analysis of Convergence Between Organismal Traits and DNA/Protein Sequences

Global functions | |
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CanonicalForm | Source code |

RERconverge | Man page |

RERconverge-package | Man page |

allPathMasterRelative | Source code |

allPaths | Source code |

between | Source code |

char2Paths | Man page Source code |

checkOrder | Source code |

click_plot_base | Source code |

click_select_foreground_branches | Man page Source code |

computeWeightsAllVar | Source code |

correlateTrees | Source code |

correlateTreesAll | Source code |

correlateTreesAll1 | Source code |

correlateTreesBinary | Source code |

correlateTreesProj | Source code |

correlateWithBinaryPhenotype | Man page Source code |

correlateWithContinuousPhenotype | Man page Source code |

distToVec | Source code |

edgeIndexRelativeMaster | Source code |

edgeReOrder | Source code |

edgeVars | Man page Source code |

fastLm | Source code |

fastLmPredicted | Source code |

fastLmPredictedMat | Source code |

fastLmResid | Source code |

fastLmResidMat | Source code |

fastLmResidMatWeighted | Source code |

fastLmResidMatWeightedNoNACheck | Source code |

fastLmResidWeighted | Source code |

fastwilcoxGMT | Source code |

fastwilcoxGMTall | Man page Source code |

findAllPaths | Source code |

findJoining | Source code |

fixPseudoroot | Source code |

foreground2Paths | Man page Source code |

foreground2Tree | Man page Source code |

getAllCladeEdges | Source code |

getAllCor | Man page Source code |

getAllResiduals | Man page Source code |

getAncestor | Source code |

getAncestors | Source code |

getBranch | Source code |

getChildren | Source code |

getNV | Source code |

getProjection | Source code |

getProjectionPaths | Source code |

getRoot | Source code |

getStat | Man page Source code |

getancedgexlims | Source code |

getancedgeylims | Source code |

inferBidirectionalForegroundClades | Source code |

inferUnidirectionalForegroundClades | Source code |

isNA | Source code |

isNotNArowvec | Source code |

makeBinaryPaths | Man page Source code |

mapEdge | Source code |

matchAllNodes | Source code |

matchNodesInject | Source code |

matchNodesInjectUpdate | Source code |

missingSampler | Source code |

myAUC | Source code |

nameEdges | Source code |

namePaths | Source code |

namePathsWSpecies | Man page Source code |

naresid | Source code |

naresidCPP | Source code |

nvmaster | Source code |

plotContinuousCharXY | Source code |

plotRers | Man page Source code |

plotResidsVsChar | Source code |

plotTreeHighlightBranches | Man page Source code |

plotTreesBinary | Source code |

plotWtext | Source code |

printClade | Source code |

printLeaveEdges | Source code |

printTipDist | Source code |

projectRLM | Source code |

projection | Source code |

projectionSQ | Source code |

pruneTree | Man page Source code |

read.gmt | Man page Source code |

readTrees | Man page Source code |

rescaleTree | Source code |

resid | Source code |

residLN | Source code |

residLN0 | Source code |

residLO | Source code |

residSQ | Source code |

scaleDist | Source code |

scaleMat | Source code |

simpleAUCgenesRanks | Source code |

simpleAUCmat | Source code |

timesTwo | Source code |

transformMat | Source code |

tree2Paths | Man page Source code |

treePlot | Source code |

treePlotNew | Source code |

treeSum | Source code |

treeTraverse | Source code |

varExplainedWithNA | Source code |

wilcoxGMT | Source code |

wilcoxGMTall | Source code |

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