Files in nclark-lab/RERconverge
Analysis of Convergence Between Organismal Traits and DNA/Protein Sequences

.DS_Store
.Rbuildignore
.gitignore
.gitignore~
DESCRIPTION
LICENSE
NAMESPACE
R/RERfuncs.R R/RcppExports.R R/coordsfn.R R/enrichmentFuncs.R R/plottingFuncs.R R/projection_coevo.R README.md RERconverge-master.pdf
RERconverge.Rproj
data/RERresults.RData
data/logAdultWeightcm.RData
data/mamTreesSub.RData
data/marineBinary.RData
data/marineTreesSub.RData
ext/MammalToyTrees.txt
ext/MarineGeneTrees.tre
ext/MarineTreeBin.txt
ext/MarineTreeBinCommonNames.txt
ext/mammal62aa_meredplus_wCM.trees
ext/mammal_62_aa_sub.tre
ext/speciesCommonAbbr.name
ext/subsetMammalGeneTrees.txt
inst/extdata/MammalToyTrees.txt
inst/extdata/MarineTreeBin.txt
inst/extdata/MarineTreeBinCommonNames.txt
inst/extdata/MarineTreeBinCommonNames_noCGM.txt
inst/extdata/mammal_62_aa_sub.tre
inst/extdata/subsetMammalGeneTrees.txt
man/RERconverge.Rd man/char2Paths.Rd man/click_select_foreground_branches.Rd man/correlateWithBinaryPhenotype.Rd man/correlateWithContinuousPhenotype.Rd man/edgeVars.Rd man/fastwilcoxGMTall.Rd man/foreground2Paths.Rd man/foreground2Tree.Rd man/getAllCor.Rd man/getAllResiduals.Rd man/getStat.Rd man/makeBinaryPaths.Rd man/namePathsWSpecies.Rd man/plotRers.Rd man/plotTreeHighlightBranches.Rd man/pruneTree.Rd man/read.gmt.Rd man/readTrees.Rd man/tree2Paths.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/resid.cpp
tests/CheckTree2Paths.R tests/ConvertSpeciesNames.R
tests/PON1_addl_species.tre
tests/SpeciesNameConversionTable0818.csv
tests/SpeciesNames.RData
tests/checkTreeMatch.R
tests/herbivoreTest.RData
tests/herbivoreTest.pdf tests/herbivoreTest_al_wt_an_te.pdf tests/runMarineSub-003.pdf tests/runMarineSub.R
tests/runMarineSub.Rnw
tests/runMarineSub.pdf
tests/ucsc62mammals_commonnames.tre
tests/ucscTrees.RData
vignettes/.DS_Store
vignettes/.Rapp.history
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nclark-lab/RERconverge documentation built on Dec. 3, 2018, 7:12 p.m.