regressionNetworkViz: Visualize a regression result by a d3 network visualization.

In neuroconductor-devel/ANTsR: ANTs in R: Quantification Tools for Biomedical Images

Description

Use either a force directed graph or a Sankey graph to show relationships between predictors and outcome variables. correlateMyOutcomes should correspond to the outcome variables ...

Usage

regressionNetworkViz(
  mylm,
  sigthresh = 0.05,
  whichviz = "Sankey",
  outfile = "temp.html",
  mygroup = 0,
  logvals = TRUE,
  verbose = FALSE,
  correlateMyOutcomes = NA,
  corthresh = 0.9,
  zoom = FALSE,
  doFDR = TRUE
)

Arguments

mylm	lm model output from bigLMStats
sigthresh	significance threshold
whichviz	which visualization method
outfile	significance threshold
mygroup	color each entry by group membership
logvals	bool
verbose	bool
correlateMyOutcomes	not sure, see code
corthresh	correlation threshold
zoom	zooming factor
doFDR	bool

Value

html file is output

Author(s)

Avants BB

Examples

## Not run: 
colnames(brainpreds)<-paste('Vox',c(1:ncol(brainpreds)),sep='')
colnames( mylm$beta.pval )<-colnames(brainpreds)
demognames<-rownames(mylm$beta.pval)
myout = regressionNetworkViz( mylm , sigthresh=0.05, outfile='temp2.html')

## End(Not run)

neuroconductor-devel/ANTsR documentation built on April 1, 2021, 1:02 p.m.