robex: Executes Robust Brain Extraction

In neuroconductor-devel/robex: Robust Brain Extraction ('ROBEX')

Description

Executes Robust Brain Extraction

Usage

robex(infile, outfile = tempfile(fileext = ".nii.gz"), verbose = TRUE, ...)

Arguments

infile	Input filename
outfile	Output skull-stripped file
verbose	print diagnostic messages
...	arguments to be passed to system

Value

List of result of system command, names of input and output file

Examples

result = robex(infile = "", outfile = "")

if (requireNamespace("kirby21.t1", quietly = TRUE)) {
   infile = kirby21.t1::get_t1_filenames(id = "113", visit = 1)
   if (is.null(infile)) {
      infile = ""
   }
   if (!file.exists(infile)) {
      outdir = tempdir()
      try({kirby21.t1::download_t1_data(outdir = outdir)})
     infile = kirby21.t1::get_t1_filenames(
     id = "113", visit = 1,
     outdir = outdir)
   }
   if (!is.null(infile)) {
     if (file.exists(infile)) {
       result = robex(infile = infile)
       stopifnot(file.exists(result$outfile))
     }
   }
}

neuroconductor-devel/robex documentation built on May 17, 2021, 2:22 a.m.