In neuroconductor/spant: MR Spectroscopy Analysis Tools

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Spectroscopy Analysis Tools (spant)

Overview

spant provides a full suite of tools to build automated analysis pipelines for Magnetic Resonance Spectroscopy (MRS) data. The following features are included:

• Raw data import/export.
• Flexible data types to support single voxel, dynamic and spectroscopic imaging data types.
• Publication quality plotting.
• Extensive set of pre-processing steps (phasing, coil-combination, zero-filling, HSVD filtering...)
• Quantum mechanical based simulation for experimental design and basis-set generation.
• Set of metabolite, macromolecule and lipid parameters for typical brain analyses.
• VARPRO based fitting and interfaces for TARQUIN and LCModel for metabolite quantitation.
• Voxel registration to anatomical images for partial volume concentration corrections.

Installation

You can install the stable version of spant from CRAN:

install.packages("spant", dependencies = TRUE)

Or the the development version from GitHub (requires devtools package):

install.packages("devtools")
devtools::install_github("martin3141/spant")

neuroconductor/spant documentation built on May 25, 2021, 1:49 a.m.