Files in niekverw/ukbpheno
Extraction and processing UK Biobank data to generate health outcome phenotypes
DESCRIPTION
LICENSE
NAMESPACE
R/ProcessdfDefinitions.R
R/convert_cancerregister_to_episodedata.r
R/convert_nurseinterview_to_episodedata.r
R/convert_touchscreen_to_episodedata.r
R/plot_timeline.R
R/prepare_ukb_data.R
R/process_event_tables.r
R/query-event-tables.r
R/read-data-ukb-functions.R
R/reexports.r
R/visualization_summary_level.r
README.md
inst/extdata/20001.coding3.tsv
inst/extdata/20002.coding6.tsv
inst/extdata/20003.coding4.tsv
inst/extdata/20004.coding5.tsv
inst/extdata/ICD10.coding19.tsv
inst/extdata/ICD9.coding87.tsv
inst/extdata/OPCS3.coding259.tsv
inst/extdata/OPCS4.coding240.tsv
inst/extdata/data.settings.tsv
inst/extdata/deathInSource.coding261.tsv
inst/extdata/definitions_DmRxT2.tsv
inst/extdata/definitions_cardiometabolic_traits.tsv
inst/extdata/dfCodesheetREAD_SR.Coding.RData
inst/extdata/gpclinical.read2.code
inst/extdata/gpclinical.read3.code
inst/extdata/gpscript.bnf.code
inst/extdata/gpscript.dmd.code
inst/extdata/gpscript.read2.code
inst/extdata/read2_bnf
inst/extdata/read2_dmd
inst/extdata/read2_to_ctv3_drugs_lookup.codemap
inst/extdata/read_ctv3_lkp.tsv
inst/extdata/read_v2_drugs_lkp.tsv
inst/extdata/read_v2_lkp.tsv
inst/util/shiny.lookup_codes.R
inst/workflow_example/run_example.R
man/CheckDuplicateTRAITS.Rd
man/ConvertFactorsToStringReplaceNAInDf.Rd
man/PreProcessDfDefinitions.Rd
man/ProcessDfDefinitions.Rd
man/ReplaceNAWithNearestNonNAOnTheLeft.Rd
man/add_child_nodes.Rd
man/check_dfDefinitions_codes.Rd
man/convert_cancerregister_to_episodedata.Rd
man/convert_col_to_integer.Rd
man/convert_dataframelist_to_lst.Rd
man/convert_nurseinterview_to_episodedata.Rd
man/convert_touchscreen_to_episodedata.Rd
man/convert_year_to_date.Rd
man/default_ukb_fields.Rd
man/dotplot_diseases_by_source.Rd
man/expand_dfDefinitions_processed.Rd
man/expand_dfDefinitions_processed2.Rd
man/get_all_events.Rd
man/get_allvarnames.Rd
man/get_case_count_by_source.Rd
man/get_case_status_by_source.Rd
man/get_cases.Rd
man/get_cases_controls.Rd
man/get_incidence_prevalence.Rd
man/get_lst_counts.Rd
man/get_stats_for_events.Rd
man/harmonize_ukb_data.Rd
man/isNullNaNan.Rd
man/lookup.codes.Rd
man/make_upsetplot.Rd
man/parseIncludeExcludeCol.Rd
man/parse_gp_clinical_values.Rd
man/pasteRemoveNA.Rd
man/plot_disease_timeline_by_source.Rd
man/plot_individual_timeline.Rd
man/rand_col_vec.Rd
man/read_death_data.Rd
man/read_definition_table.Rd
man/read_gp_clinical_data.Rd
man/read_gp_script_data.Rd
man/read_hesin_data.Rd
man/read_ukb_metadata.Rd
man/read_ukb_tabdata.Rd
man/reexports.Rd
plots/clasification.cooccurence.jpeg
plots/class.cooccur.recurCad.png
plots/code.summary.recurCad.png
plots/codes.cooccur.dendro.recurCad.png
plots/codes.cooccur.heat.recurCad.png
plots/codes.cooccurence.jpeg
plots/codes.jpeg
plots/individual.timeplot.recurCad.png
ukbpheno.Rproj
