nrzabet/DMRcaller: Differentially Methylated Regions caller
Uses Bisulfite sequencing data in two conditions and identifies differentially methylated regions between the conditions in CG and non-CG context. The input is the CX report files produced by Bismark and the output is a list of DMRs stored as GRanges objects.
Getting started
Browse package contents
Package details |
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| Author | Nicolae Radu Zabet <n.r.zabet@gen.cam.ac.uk>, Jonathan Michael Foonlan Tsang <jmft2@cam.ac.uk>, Alessandro Pio Greco <apgrec@essex.ac.uk> and Ryan Merritt <rmerri@essex.ac.uk> |
| Bioconductor views | Coverage DNAMethylation DifferentialMethylation Sequencing Software |
| Maintainer | Nicolae Radu Zabet <n.r.zabet@gen.cam.ac.uk> |
| License | GPL-3 |
| Version | 1.15.2 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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