nrzabet/DMRcaller: Differentially Methylated Regions caller

Uses Bisulfite sequencing data in two conditions and identifies differentially methylated regions between the conditions in CG and non-CG context. The input is the CX report files produced by Bismark and the output is a list of DMRs stored as GRanges objects.

Getting started

Package details

AuthorNicolae Radu Zabet <[email protected]>, Jonathan Michael Foonlan Tsang <[email protected]>, Alessandro Pio Greco <[email protected]> and Ryan Merritt <[email protected]>
Bioconductor views Coverage DNAMethylation DifferentialMethylation Sequencing Software
MaintainerNicolae Radu Zabet <[email protected]>
LicenseGPL-3
Version1.15.2
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("nrzabet/DMRcaller")
nrzabet/DMRcaller documentation built on Feb. 19, 2019, 2:27 p.m.