API for nuno-agostinho/psichomics
Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation

Global functions
addTCGAdata Man page Source code
analysesServer Man page Source code
analysesUI Man page Source code
appServer Man page Source code
appUI Man page Source code
articleUI Man page Source code
basicStats Man page Source code
browserHistory Man page Source code
bsModal2 Man page Source code
calculateInclusionLevels Man page Source code
checkFileFormat Man page Source code
checkFirebrowse Man page Source code
checkIntegrity Man page Source code
checkSurvivalInput Man page Source code
closeProgress Man page Source code
colsAsNumbers Source code
createDataTab Man page Source code
createDensitySparklines Man page Source code
createEventPlotting Man page Source code
createGroup Man page Source code
createGroupByAttribute Man page Source code
createGroupByColumn Man page Source code
createGroupById Man page Source code
createGroupFromInput Man page Source code
createJunctionsTemplate Man page Source code
createTooltip Man page Source code
dataServer Man page Source code
dataUI Man page Source code
diffAnalyses Man page Source code
diffSplicingEventServer Man page Source code
diffSplicingEventUI Man page Source code
diffSplicingServer Man page Source code
diffSplicingTableServer Man page Source code
diffSplicingTableUI Man page Source code
diffSplicingUI Man page Source code
disableTab Man page Source code
downloadFiles Man page Source code
echoProgress Man page Source code
enableTab Man page Source code
endProcess Man page Source code
ensemblToUniprot Man page Source code
errorAlert Man page Source code
errorDialog Man page Source code
errorModal Man page Source code
escape Man page Source code
eventPlotOptions Man page Source code
export_highcharts Man page Source code
filterGroups Man page Source code
firebrowseGeneExpressionFormat Source code
firebrowseJunctionReadsFormat Source code
firebrowseMergeClinicalFormat Source code
firebrowseServer Source code
firebrowseUI Man page Source code
fisher Man page Source code
fligner Man page Source code
getActiveDataset Man page
getAssemblyVersion Man page Source code
getAutoNavigation Man page
getCategories Man page
getCategory Man page
getCategoryData Man page
getClinicalData Man page
getClinicalMatchFrom Man page Source code
getColumnsTime Man page Source code
getCores Man page
getData Man page
getDataRows Man page Source code
getDifferentialAnalyses Man page Source code
getDifferentialAnalysesFiltered Man page Source code
getDifferentialAnalysesHighlightedEvents Man page Source code
getDifferentialAnalysesSelected Man page Source code
getDifferentialAnalysesSurvival Man page Source code
getDifferentialAnalysesZoom Man page Source code
getDownloadsFolder Man page Source code
getEvent Man page
getFirebrowseCohorts Man page Source code
getFirebrowseDataTypes Man page Source code
getFirebrowseDateFormat Man page Source code
getFirebrowseDates Man page Source code
getFirehoseCohorts Man page
getFirehoseDataTypes Man page
getFirehoseDates Man page
getGlobal Man page Source code
getGroupsFrom Man page Source code
getInclusionLevels Man page
getInclusionLevelsPCA Man page Source code
getJunctionQuantification Man page Source code
getMatchingSamples Man page Source code
getNumerics Man page Source code
getPSIperPatient Man page Source code
getPatientFromSample Man page Source code
getPatientId Man page Source code
getPrecision Man page
getSampleId Man page Source code
getSampleInfo Man page
getSelectedGroups Man page Source code
getServerFunctions Man page Source code
getSignificant Man page
getSpecies Man page Source code
getSplicingEventCoordinates Man page Source code
getSplicingEventTypes Man page Source code
getURLtoDownload Man page Source code
getUiFunctions Man page Source code
getValidEvents Man page Source code
globalSelectize Man page Source code
groupByAttribute Man page Source code
groupByExpression Man page Source code
groupByGrep Man page Source code
groupById Man page Source code
groupPerPatient Man page Source code
groupPerSample Man page Source code
groupsServer Man page Source code
groupsServerOnce Man page Source code
groupsUI Man page Source code
gtexClinicalInfoFormat Source code
gtexDataServer Man page Source code
gtexDataUI Man page Source code
gtexJunctionReadsFormat Source code
gtexSampleInfoFormat Source code
hc_scatter Man page Source code
hchart.survfit Man page Source code
helpServer Man page Source code
helpUI Man page Source code
inclusionLevelsInterface Man page Source code
inclusionLevelsServer Man page Source code
inclusionLevelsUI Man page Source code
infoModal Man page Source code
infoServer Man page Source code
infoUI Man page Source code
insideFile Man page Source code
is.whole Man page Source code
isFirebrowseUp Man page Source code
isFirehoseUp Man page
joinEventsPerType Man page Source code
junctionString Man page Source code
kruskal Man page Source code
labelBasedOnCutoff Man page Source code
levene Man page Source code
leveneTest Man page Source code
listAllAnnotations Man page Source code
listSplicingAnnotations Man page Source code
loadAnnotation Man page Source code
loadBy Man page Source code
loadFile Man page Source code
loadFileFormats Man page Source code
loadFirebrowseData Man page Source code
loadFirebrowseFolders Man page Source code
loadFirehoseData Man page
loadFirehoseFolders Man page
loadGtexData Man page Source code
loadLocalFiles Man page Source code
loadRequiredData Man page Source code
loadedDataModal Man page Source code
localDataServer Man page Source code
localDataUI Man page Source code
missingDataGuide Man page Source code
missingDataModal Man page Source code
modTabPanel Man page Source code
navSelectize Man page Source code
noinfo Man page Source code
onAttach Source code
operateOnGroups Man page Source code
optimSurvDiff Man page Source code
optimalPSIcutoff Man page Source code
parseDateResponse Man page Source code
parseFirebrowseMetadata Man page Source code
parseFirehoseMetadata Man page
parseMatsA3SS Man page Source code
parseMatsA5SS Man page Source code
parseMatsAFE Man page Source code
parseMatsALE Man page Source code
parseMatsAnnotation Man page Source code
parseMatsEvent Man page Source code
parseMatsGeneric Man page Source code
parseMatsMXE Man page Source code
parseMatsRI Man page Source code
parseMatsSE Man page Source code
parseMisoA3SS Man page Source code
parseMisoA5SS Man page Source code
parseMisoAFE Man page Source code
parseMisoALE Man page Source code
parseMisoAnnotation Man page Source code
parseMisoEvent Man page Source code
parseMisoEventID Man page Source code
parseMisoGeneric Man page Source code
parseMisoId Man page Source code
parseMisoMXE Man page Source code
parseMisoRI Man page Source code
parseMisoSE Man page Source code
parseMisoTandemUTR Man page Source code
parseSampleGroups Man page Source code
parseSplicingEvent Man page Source code
parseSuppaA3SS Man page Source code
parseSuppaA5SS Man page Source code
parseSuppaAFE Man page Source code
parseSuppaALE Man page Source code
parseSuppaAnnotation Man page Source code
parseSuppaEvent Man page Source code
parseSuppaGeneric Man page Source code
parseSuppaMXE Man page Source code
parseSuppaRI Man page Source code
parseSuppaSE Man page Source code
parseTcgaSampleInfo Man page Source code
parseUniprotXML Man page Source code
parseUrlsFromFirebrowseResponse Man page Source code
parseUrlsFromFirehoseResponse Man page
parseValidFile Man page Source code
parseVastToolsA3SS Man page Source code
parseVastToolsA5SS Man page Source code
parseVastToolsAnnotation Man page Source code
parseVastToolsEvent Man page Source code
parseVastToolsRI Man page Source code
parseVastToolsSE Man page Source code
pcaServer Man page Source code
pcaUI Man page Source code
performPCA Man page Source code
plotDistribution Man page Source code
plotMiniSurvivalCurves Man page Source code
plotPCA Man page Source code
plotPointsStyle Man page Source code
plotProtein Man page Source code
plotSurvivalCurves Man page Source code
plotTranscripts Man page Source code
plotVariance Man page Source code
plottableXranges Man page Source code
prepareAnnotationFromEvents Man page Source code
prepareFirebrowseArchives Man page Source code
prepareFirehoseArchives Man page
processButton Man page Source code
processDatasetNames Man page Source code
processSurvData Man page Source code
processSurvTerms Man page Source code
processSurvival Man page Source code
psichomics Man page Source code
pubmedUI Man page Source code
quantifySplicing Man page Source code
queryEnsembl Man page Source code
queryEnsemblByEvent Man page Source code
queryEnsemblByGene Man page Source code
queryFirebrowseData Man page Source code
queryFirehoseData Man page
queryPubMed Man page Source code
queryUniprot Man page Source code
readFile Man page Source code
removeAlert Man page Source code
renameDuplicated Man page Source code
renameGroups Man page Source code
renderDataTableSparklines Man page Source code
renderGeneticInfo Man page Source code
renderProteinInfo Man page Source code
rm.null Man page Source code
roundDigits Man page Source code
rowVar Man page Source code
selectGroupsServer Man page Source code
selectGroupsUI Man page Source code
setActiveDataset Man page Source code
setAssemblyVersion Man page Source code
setAutoNavigation Man page Source code
setCategory Man page Source code
setClinicalMatchFrom Man page Source code
setCores Man page Source code
setData Man page Source code
setDifferentialAnalyses Man page Source code
setDifferentialAnalysesFiltered Man page Source code
setDifferentialAnalysesHighlightedEvents Man page Source code
setDifferentialAnalysesSelected Man page Source code
setDifferentialAnalysesSurvival Man page Source code
setDifferentialAnalysesZoom Man page Source code
setEvent Man page Source code
setFirebrowseData Man page Source code
setGlobal Man page Source code
setGroupsFrom Man page Source code
setInclusionLevels Man page Source code
setInclusionLevelsPCA Man page Source code
setLocalData Man page Source code
setPatientId Man page Source code
setPrecision Man page Source code
setSampleId Man page Source code
setSampleInfo Man page Source code
setSignificant Man page Source code
setSpecies Man page Source code
setURLtoDownload Man page Source code
showAlert Man page Source code
showGroupsTable Man page Source code
signifDigits Man page Source code
singleDiffAnalyses Man page Source code
sortCoordinates Man page Source code
spearman Man page Source code
startProcess Man page Source code
startProgress Man page Source code
styleModal Man page Source code
survdiff.survTerms Man page Source code
survfit.survTerms Man page Source code
survivalServer Man page Source code
survivalUI Man page Source code
tabDataset Man page Source code
templateServer Man page Source code
templateUI Man page Source code
testSurvival Man page Source code
testSurvivalCutoff Man page Source code
textSuggestions Man page Source code
timePerPatient Man page Source code
transformData Man page Source code
transformOptions Man page Source code
transformValues Man page Source code
trimWhitespace Man page Source code
ttest Man page Source code
uniqueBy Man page Source code
updateClinicalParams Man page Source code
updateProgress Man page Source code
vennEvents Man page Source code
warningAlert Man page Source code
warningModal Man page Source code
wilcox Man page Source code
nuno-agostinho/psichomics documentation built on May 23, 2017, 5:27 p.m.