getEvent: Get or set globally accessible elements

Description Usage Arguments Value See Also

Description

Get or set globally accessible elements

Usage

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Arguments

event

Character: alternative splicing event

category

Character: data category (e.g. "Carcinoma 2016"); by default, it uses the selected data category

dataset

Character: dataset name

attrs

Character: name of attributes to retrieve (if NULL, the whole dataset is returned)

value

Value to attribute to an element

geneExpr

Data frame or matrix: normalised gene expression

incLevels

Data frame or matrix: inclusion levels

pca

prcomp object (principal component analysis)

ica

Object containing independent component analysis

groupIndependenceTesting

Object containing group independence testing results

species

Character: species

assembly

Character: assembly version

annotName

Character: annotation name

url

Character: URL links to download

Value

Getters return globally accessible data, whereas setters return NULL as they are only used to modify the Shiny session's state

See Also

getEvent, getClinicalMatchFrom, getGroups and getDifferentialAnalyses


nuno-agostinho/psichomics documentation built on Nov. 1, 2017, 3:18 p.m.