Files in oganm/regenerationCMap
Regenation colab project
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/import.R
R/stats.R
README.md
analysis/00.DownloadPreprocess/00.DownloadPreprocess.R
analysis/00.DownloadPreprocess/01.LincsDownload.R
analysis/00.DownloadPreprocess/02.FWDownload.R
analysis/00.DownloadPreprocess/03.PavDownload.R
analysis/00.DownloadPreprocess/04.precalculations.R
analysis/01.CmapEnrichment/01.ScoreCalc.R
analysis/01.CmapEnrichment/results/.~lock.combined.tsv#
analysis/01.CmapEnrichment/results/combined.tsv
analysis/01.CmapEnrichment/results/enrichment/E12_1_week_IP_vs_naive_adult_3_IP_enrichment.tsv
analysis/01.CmapEnrichment/results/enrichment/E12_2_week_IP_vs_naive_adult_3_IP_enrichment.tsv
analysis/01.CmapEnrichment/results/enrichment/E12_3_day_IP_vs_naive_adult_3_IP_enrichment.tsv
analysis/01.CmapEnrichment/results/enrichment/naive_1_week_IP_vs_naive_adult_3_IP_enrichment.tsv
analysis/01.CmapEnrichment/results/enrichment/naive_2_weeks_IP_vs_naive_adult_3_IP_enrichment.tsv
analysis/01.CmapEnrichment/results/enrichment/naive_3_days_IP_vs_naive_adult_3_IP_enrichment.tsv
analysis/01.CmapEnrichment/results/heatmap.png
analysis/01.CmapEnrichment/results/instanceScores/E12_1_week_IP_vs_naive_adult_3_IP_instanceScores.tsv
analysis/01.CmapEnrichment/results/instanceScores/E12_2_week_IP_vs_naive_adult_3_IP_instanceScores.tsv
analysis/01.CmapEnrichment/results/instanceScores/E12_3_day_IP_vs_naive_adult_3_IP_instanceScores.tsv
analysis/01.CmapEnrichment/results/instanceScores/naive_1_week_IP_vs_naive_adult_3_IP_instanceScores.tsv
analysis/01.CmapEnrichment/results/instanceScores/naive_2_weeks_IP_vs_naive_adult_3_IP_instanceScores.tsv
analysis/01.CmapEnrichment/results/instanceScores/naive_3_days_IP_vs_naive_adult_3_IP_instanceScores.tsv
analysis/01.CmapEnrichment/results/tags/E12_1_week_IP_vs_naive_adult_3_IP_downTags.grp
analysis/01.CmapEnrichment/results/tags/E12_1_week_IP_vs_naive_adult_3_IP_upTags.grp
analysis/01.CmapEnrichment/results/tags/E12_2_week_IP_vs_naive_adult_3_IP_downTags.grp
analysis/01.CmapEnrichment/results/tags/E12_2_week_IP_vs_naive_adult_3_IP_upTags.grp
analysis/01.CmapEnrichment/results/tags/E12_3_day_IP_vs_naive_adult_3_IP_downTags.grp
analysis/01.CmapEnrichment/results/tags/E12_3_day_IP_vs_naive_adult_3_IP_upTags.grp
analysis/01.CmapEnrichment/results/tags/naive_1_week_IP_vs_naive_adult_3_IP_downTags.grp
analysis/01.CmapEnrichment/results/tags/naive_1_week_IP_vs_naive_adult_3_IP_upTags.grp
analysis/01.CmapEnrichment/results/tags/naive_2_weeks_IP_vs_naive_adult_3_IP_downTags.grp
analysis/01.CmapEnrichment/results/tags/naive_2_weeks_IP_vs_naive_adult_3_IP_upTags.grp
analysis/01.CmapEnrichment/results/tags/naive_3_days_IP_vs_naive_adult_3_IP_downTags.grp
analysis/01.CmapEnrichment/results/tags/naive_3_days_IP_vs_naive_adult_3_IP_upTags.grp
analysis/02.L1000Analysis/01.L1000Run.R
analysis/02.L1000Analysis/02.FWDRun.R
analysis/02.L1000Analysis/03.PavRun.R
analysis/02.L1000Analysis/04.resultComparison.R
analysis/02.L1000Analysis/results/cor_plot.png
data-raw/GemmaAnnots/GPL96
data-raw/dif_exp_data/DEA_wo_3day_naive_IP1/Complete_geneList_EdgeR.xlsx
data-raw/msigdb_gene_sets.zip
data/MSigDB.rda
data/MSigDB_enrich.rda
data/dif_exp_data.rda
data/memoKsCalc.rda
data/memoRandomV.rda
man/reexports.Rd
regenerationCMap.Rproj
