Files in olli0601/PANGEA.HIV.sim
PANGEA.HIV.sim
.project
DESCRIPTION
LICENSE
NAMESPACE
R/.DS_Store
R/hptn071.cmd.R
R/hptn071.fun.R
R/hptn071.prog.R
README.md
TITLE
data/.DS_Store
example/ex.HPTN071.simulator.R
example/ex.pipeline.DSPS.R
example/ex.pipeline.HPTN071.R
example/ex.seq.sampler.DSPS.v2.R
example/ex.seq.sampler.v1.R
example/ex.seq.sampler.v2.R
example/ex.seq.sampler.v4.R
example/ex.seqgen.inputfilecreator.R
example/ex.seqgen.run.R
example/ex.virus.tree.simulator.R
inst/.DS_Store
inst/HPTN071.input.parser.v4.Rscript
inst/PANGEA.GenDist.calculator.Rscript
inst/PANGEA.SeqGen.createInputFile.Rscript
inst/PANGEA.SeqGen.run.v4.Rscript
inst/ext/.DS_Store
inst/ext/Seq-Gen.git.151006.tar.gz
inst/ext/Seq-Gen.v1.3.3.tgz
inst/ext/VirusTreeSimulator.jar
inst/ext/qdist-src-2.0.zip
inst/ext/seq-gen_v161121.tar.gz
inst/misc/.DS_Store
inst/misc/BEAST_template_vTESTenv.xml
inst/misc/BEAST_template_vTESTgag.xml
inst/misc/BEAST_template_vTESTpol.xml
inst/misc/BEAST_template_vTESTpol_fixedtree.xml
inst/misc/BEAST_template_vTESTpol_grid-fixedtree.xml
inst/misc/PANGEA_SSAfgBwhRc-_140907_n390_AncSeq.R
inst/misc/PANGEA_SSAfgBwhRc-_140907_n390_BEASTlog.R
inst/misc/PANGEA_SSAfg_HXB2outgroup.R
inst/misc/rPANGEAHIV.prjcts.R
inst/misc/rPANGEAHIV.startme.R
man/PANGEA.GTR.params.Rd
man/PANGEA.RootSeq.create.sampler.Rd
man/PANGEA.TransmissionEdgeEvolutionaryRate.create.sampler.Rd
man/PANGEA.WithinHostEvolutionaryRate.create.sampler.v1.Rd
man/VirusTreeSimulator_maths.pdf
man/cmd.HPTN071.input.parser.v4.Rd
man/cmd.HPTN071.simulator.Rd
man/cmd.SeqGen.createInputFiles.Rd
man/cmd.SeqGen.run.Rd
man/cmd.VirusTreeSimulator.Rd
man/fig_ERmodel.png
man/fig_EffPopSize.png
man/fig_GTR.png
man/fig_StartingSequenceByDate.png
man/fig_geneEvolutionaryRates.png
man/fig_viralintro.png
man/sim.regional.Rd
man/sim.regional.args.Rd
misc/.DS_Store
misc/.gitignore
misc/PANGEAHIVsim_Submission_Reader.R
misc/hptn071.old.R
misc/rPANGEAHIV.evaluate.comp.ex.R
misc/rPANGEAHIV.prjcts.R
misc/rPANGEAHIV.startme.R
misc/rPANGEAHIV.treecomparison.R
misc/test.R
src/.DS_Store
src/.gitignore
src/Makefile
src/Makevars
