DoseR is a set of tools used for dose response analysis.
The packages is features (or, is planned to feature): Pre-processing of dose response data Estimation of the G-model
If you wish to install the latest version of
DoseR directly from the master branch here at GitHub, run
# Install necessary packages # First from bioconductor source("http://bioconductor.org/biocLite.R") biocLite("prada") # Then from CRAN install.packages(c("foreign", "gdata", "plyr", "WriteXLS", "nlme", "RJSONIO", "RCurl", "XML", "RColorBrewer", "Hmisc", "animation", "selectr")) # From GitHub install.packages("devtools") devtools::install_github("rstudio/shiny-incubator") devtools::install_github("oncoclass/DoseR", dependencies = FALSE)
DoseR is still under development and should be considered unstable. Be sure that you have the package development prerequisites if you wish to install the package from the source.
Note: The interface and function names may still see significant changes and modifications!
A small tutorial goes here!
The supplied expression matrices to be converted are arrange in the tall configuration. I.e. we have features in the rows and samples in columns.
References goes here!
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