Files in osmose-model/osmose
Object Oriented Simulator of Marine Ecosystems

.RData
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md R/aaa-.R R/ex_osmose-plot.R R/osmose-auxiliar.R R/osmose-class.R R/osmose-getVar.R R/osmose-internal.R R/osmose-main.R R/osmose-package.R R/osmose-plot-auxiliar.R R/osmose-plot-nico.R R/osmose-plot-util.R R/osmose-plot.R R/osmose.config-class.R R/osmose.config-internal.R R/osmose.config-plot-auxiliar.R R/osmose.config-plot.R R/osmose.interannual-auxiliar.R R/osmose.interannual-fishing.R R/osmose.interannual-internal.R R/osmose.interannual.R R/osmose.maps.R R/osmose.netcdf.R README.md cran-comments.md
inst/extdata/calib/DATA/DiplodusAnnularis.landings.csv
inst/extdata/calib/DATA/DiplodusAnnularis.thr.csv
inst/extdata/calib/DATA/EngraulisEncrasicolus.biomass.csv
inst/extdata/calib/DATA/EngraulisEncrasicolus.landings.csv
inst/extdata/calib/DATA/EngraulisEncrasicolus.thr.csv
inst/extdata/calib/DATA/MelicertusKerathurus.landings.csv
inst/extdata/calib/DATA/MelicertusKerathurus.thr.csv
inst/extdata/calib/DATA/MerlucciusMerluccius.landings.csv
inst/extdata/calib/DATA/MerlucciusMerluccius.thr.csv
inst/extdata/calib/DATA/MetapenaeusMonoceros.landings.csv
inst/extdata/calib/DATA/MetapenaeusMonoceros.thr.csv
inst/extdata/calib/DATA/MustelusMustelus.landings.csv
inst/extdata/calib/DATA/MustelusMustelus.thr.csv
inst/extdata/calib/DATA/OctopusVulgaris.landings.csv
inst/extdata/calib/DATA/OctopusVulgaris.thr.csv
inst/extdata/calib/DATA/PagellusErythrinus.landings.csv
inst/extdata/calib/DATA/PagellusErythrinus.thr.csv
inst/extdata/calib/DATA/SardinaPilchardus.biomass.csv
inst/extdata/calib/DATA/SardinaPilchardus.landings.csv
inst/extdata/calib/DATA/SardinaPilchardus.thr.csv
inst/extdata/calib/DATA/SardinellaAurita.biomass.csv
inst/extdata/calib/DATA/SardinellaAurita.landings.csv
inst/extdata/calib/DATA/SardinellaAurita.thr.csv
inst/extdata/calib/DATA/TrachurusTrachurus.biomass.csv
inst/extdata/calib/DATA/TrachurusTrachurus.landings.csv
inst/extdata/calib/DATA/TrachurusTrachurus.thr.csv
inst/extdata/calib/calibrate.R
inst/extdata/calib/calibration_settings.csv
inst/extdata/calib/parameters_to_calib.csv
inst/extdata/calib/runModel.R
inst/extdata/data_fishing.csv
inst/extdata/inputs/calibration-parameters.csv
inst/extdata/inputs/config.csv
inst/extdata/inputs/grid_mask_gabes_all99.csv
inst/extdata/inputs/osm_all-parameters.csv
inst/extdata/inputs/osm_param-fishing.csv
inst/extdata/inputs/osm_param-grid.csv
inst/extdata/inputs/osm_param-init-pop.csv
inst/extdata/inputs/osm_param-ltl.csv
inst/extdata/inputs/osm_param-movement.csv
inst/extdata/inputs/osm_param-mpa.csv
inst/extdata/inputs/osm_param-natural-mortality.csv
inst/extdata/inputs/osm_param-output.csv
inst/extdata/inputs/osm_param-predation.csv
inst/extdata/inputs/osm_param-reproduction.csv
inst/extdata/inputs/osm_param-species.csv
inst/extdata/inputs/osm_param-speciesAge.csv
inst/extdata/inputs/osm_param-starvation.csv
inst/extdata/inputs/predation-accessibility.csv
inst/extdata/inputs/reproduction-seasonality-sp0.csv
inst/extdata/inputs/reproduction-seasonality-sp1.csv
inst/extdata/inputs/reproduction-seasonality-sp10.csv
inst/extdata/inputs/reproduction-seasonality-sp2.csv
inst/extdata/inputs/reproduction-seasonality-sp3.csv
inst/extdata/inputs/reproduction-seasonality-sp4.csv
inst/extdata/inputs/reproduction-seasonality-sp5.csv
inst/extdata/inputs/reproduction-seasonality-sp6.csv
inst/extdata/inputs/reproduction-seasonality-sp7.csv
inst/extdata/inputs/reproduction-seasonality-sp8.csv
inst/extdata/inputs/reproduction-seasonality-sp9.csv
inst/extdata/inputs/reproduction-seasonality.csv
inst/extdata/master/Maps/corr_grid2_DIPANN.csv
inst/extdata/master/Maps/corr_grid2_ENGENC.csv
inst/extdata/master/Maps/corr_grid2_MELKER.csv
inst/extdata/master/Maps/corr_grid2_MERMER.csv
inst/extdata/master/Maps/corr_grid2_METMON.csv
inst/extdata/master/Maps/corr_grid2_MUSMUS.csv
inst/extdata/master/Maps/corr_grid2_OCTVUL.csv
inst/extdata/master/Maps/corr_grid2_PAGERY.csv
inst/extdata/master/Maps/corr_grid2_SARAUR.csv
inst/extdata/master/Maps/corr_grid2_SARPIL.csv
inst/extdata/master/Maps/corr_grid2_TRATRA.csv
inst/extdata/master/Maps/grid2_DIPANN.csv
inst/extdata/master/Maps/grid2_ENGENC.csv
inst/extdata/master/Maps/grid2_MELKER.csv
inst/extdata/master/Maps/grid2_MERMER.csv
inst/extdata/master/Maps/grid2_METMON.csv
inst/extdata/master/Maps/grid2_MUSMUS.csv
inst/extdata/master/Maps/grid2_OCTVUL.csv
inst/extdata/master/Maps/grid2_PAGERY.csv
inst/extdata/master/Maps/grid2_SARAUR.csv
inst/extdata/master/Maps/grid2_SARPIL.csv
inst/extdata/master/Maps/grid2_TRATRA.csv
inst/extdata/master/calib_config.csv
inst/extdata/master/corr_eco3m_gog44_conversion_factor.nc
inst/extdata/master/corr_grid_mask_gabes_all99.csv
inst/extdata/master/osm_all-parameters.csv
inst/extdata/master/osm_param-fishing.csv
inst/extdata/master/osm_param-grid.csv
inst/extdata/master/osm_param-init-pop.csv
inst/extdata/master/osm_param-ltl.csv
inst/extdata/master/osm_param-movement.csv
inst/extdata/master/osm_param-mpa.csv
inst/extdata/master/osm_param-natural-mortality.csv
inst/extdata/master/osm_param-output.csv
inst/extdata/master/osm_param-predation.csv
inst/extdata/master/osm_param-reproduction.csv
inst/extdata/master/osm_param-species.csv
inst/extdata/master/osm_param-starvation.csv
inst/extdata/master/predation-accessibility.csv
inst/extdata/master/reproduction-seasonality-sp0.csv
inst/extdata/master/reproduction-seasonality-sp1.csv
inst/extdata/master/reproduction-seasonality-sp10.csv
inst/extdata/master/reproduction-seasonality-sp2.csv
inst/extdata/master/reproduction-seasonality-sp3.csv
inst/extdata/master/reproduction-seasonality-sp4.csv
inst/extdata/master/reproduction-seasonality-sp5.csv
inst/extdata/master/reproduction-seasonality-sp6.csv
inst/extdata/master/reproduction-seasonality-sp7.csv
inst/extdata/master/reproduction-seasonality-sp8.csv
inst/extdata/master/reproduction-seasonality-sp9.csv
inst/extdata/master/reproduction-seasonality.csv
inst/extdata/master/run.R
inst/extdata/outputs/AgeIndicators/gogosm_biomassDistribByAge_Simu0.csv
inst/extdata/outputs/Mortality/gogosm_mortalityRate-DiplodusAnnularis_Simu0.csv
inst/extdata/outputs/Mortality/gogosm_mortalityRate-EngraulisEncrasicolus_Simu0.csv
inst/extdata/outputs/Mortality/gogosm_mortalityRate-MelicertusKerathurus_Simu0.csv
inst/extdata/outputs/Mortality/gogosm_mortalityRate-MerlucciusMerluccius_Simu0.csv
inst/extdata/outputs/Mortality/gogosm_mortalityRate-MetapenaeusMonoceros_Simu0.csv
inst/extdata/outputs/Mortality/gogosm_mortalityRate-MustelusMustelus_Simu0.csv
inst/extdata/outputs/Mortality/gogosm_mortalityRate-OctopusVulgaris_Simu0.csv
inst/extdata/outputs/Mortality/gogosm_mortalityRate-PagellusErythrinus_Simu0.csv
inst/extdata/outputs/Mortality/gogosm_mortalityRate-SardinaPilchardus_Simu0.csv
inst/extdata/outputs/Mortality/gogosm_mortalityRate-SardinellaAurita_Simu0.csv
inst/extdata/outputs/Mortality/gogosm_mortalityRate-TrachurusTrachurus_Simu0.csv
inst/extdata/outputs/SizeIndicators/gogosm_biomassDistribBySize_Simu0.csv
inst/extdata/outputs/SizeIndicators/gogosm_meanSizeCatch_Simu0.csv
inst/extdata/outputs/SizeIndicators/gogosm_meanSize_Simu0.csv
inst/extdata/outputs/SizeIndicators/gogosm_yieldDistribBySize_Simu0.csv
inst/extdata/outputs/Trophic/gogosm_biomassPredPreyIni_Simu0.csv
inst/extdata/outputs/Trophic/gogosm_dietMatrix_Simu0.csv
inst/extdata/outputs/Trophic/gogosm_meanTLCatch_Simu0.csv
inst/extdata/outputs/Trophic/gogosm_meanTL_Simu0.csv
inst/extdata/outputs/Trophic/gogosm_predatorPressure_Simu0.csv
inst/extdata/outputs/gogosm_biomass_Simu0.csv
inst/extdata/outputs/gogosm_yield_Simu0.csv
inst/java/lib/netcdfAll-4.6.6.jar
inst/java/lib/opencsv-2.3.jar
inst/java/osmose_3.3.1.jar
inst/java/osmose_3.3.2.jar
inst/java/osmose_3.3.3.jar
inst/reports/osmose-report.Rmd
java/osmose_3.3.1.zip
java/osmose_3.3.2.zip
java/osmose_3.3.3.zip
man/configureCalibration.Rd man/correct_ltl_file.Rd man/existOsmoseParameter.Rd man/extract_grid_mask.Rd man/extract_grid_param.Rd man/find_species_index.Rd man/getAverageMortality.Rd man/getFishingBaseRate.Rd man/getFishingBaseRate.byDt.Rd man/getFishingBaseRate.byYear.Rd man/getFishingBaseRate.constant.Rd man/getFishingBaseRate.linear.Rd man/getFishingMortality.Rd man/getMortality.Rd man/getMortalityDeviation.Rd man/getOsmoseParameter.Rd man/getSizeSpectrum.Rd man/getVar.Rd man/getVar.osmose.Rd man/getVar.osmose.config.Rd man/make_movement_netcdf.Rd man/osmose-package.Rd man/plot.osmose.Rd man/plot.osmose.abundance.Rd man/plot.osmose.biomass.Rd man/plot.osmose.config.Rd man/plot.osmose.yield.Rd man/plot.osmose.yieldN.Rd man/print.osmose.Rd man/print.summary.osmose.Rd man/readOsmoseConfiguration.Rd man/readOsmoseFiles.Rd man/read_osmose.Rd man/report.Rd man/report.osmose.Rd man/runOsmose.Rd man/run_osmose.Rd man/summary.osmose.Rd man/summary.osmose.dietMatrix.Rd man/summary.osmose.mortalityRate.Rd man/writeFishingFiles.Rd man/write_osmose.Rd
osmose-model/osmose documentation built on Dec. 13, 2018, 8:09 a.m.