Man pages for oxford-pharmacoepi/CodelistGenerator
Identify Relevant Clinical Codes and Evaluate Their Use
| achillesCodeUse | Summarise code use from achilles counts |
| CodelistGenerator-package | CodelistGenerator: Identify Relevant Clinical Codes and... |
| codesFromCohort | Get concept ids from a provided path to cohort json files |
| codesFromConceptSet | Get concept ids from a provided path to json files |
| codesInUse | Get codes used in the database |
| compareCodelists | Compare two codelists |
| findOrphanCodes | Find orphan codes related to a codelist |
| getATCCodes | Get descendant codes for ATC levels |
| getCandidateCodes | Generate candidate codelist for the OMOP CDM |
| getConceptClassId | getConceptClassId |
| getDescendants | getDescendants |
| getDomains | getDomains |
| getDoseForm | getDoseForm |
| getDrugIngredientCodes | Get descendant codes for drug ingredients |
| getICD10StandardCodes | Get corresponding standard codes for ICD-10 chapters and... |
| getMappings | Show mappings from non-standard vocabularies to standard |
| getRelationshipId | Get relationship ID values from the concept relationship... |
| getVocabularies | getVocabularies |
| getVocabVersion | getVocabVersion |
| mockVocabRef | Generate example vocabulary database |
| pipe | Pipe operator |
| restrictToCodesInUse | Filter a codelist to keep only the codes used in the database |
| sourceCodesInUse | Get source codes used in the database |
| summariseCodeUse | Summarise code use in patient-level data |
| summariseCohortCodeUse | Summarise code use among a cohort in the cdm reference |
