install.R

In parklab/SigMA: Signature Multivariate Analysis

packages <- c("BSgenome",
    "BSgenome.Hsapiens.UCSC.hg19",
    "BSgenome.Hsapiens.UCSC.hg38",
    "devtools",
    "DT",
    "GenomicRanges",
    "ggplot2",
    "gbm",
    "gridExtra",
    "IRanges",
    "nnls",
    "pheatmap",
    "reshape2",
    "Rmisc",
    "VariantAnnotation")

if(getRversion() >= "3.6.0"){
  if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager", repos = "http://cran.us.r-project.org")
  BiocManager::install(packages)
}
if(getRversion() < "3.6.0" & getRversion() >= "3.5.0"){
  source("https://bioconductor.org/biocLite.R")
  biocLite(packages)
}