Files in parksw3/fitode
Tools for Ordinary Differential Equations Model Fitting
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
Makefile
NAMESPACE
R/data.R
R/fitode-class.R
R/fitode-methods.R
R/fitode.R
R/fitodeMCMC-methods.R
R/fitodeMCMC.R
R/generic.R
R/loglik.R
R/model.R
R/plot.R
R/prior.R
R/simulate.R
R/solution.R
R/transform.R
R/update.R
R/utilities.R
R/wmvrnorm.R
R/zzz.R
README.md
TODO.md
data/SierraLeone2014.rda
data/blowfly97I.rda
data/bombay.rda
data/phila1918.rda
data/tumorgrowth.rda
fitode.Rproj
inst/doc_examples/SIR_mort.rda
inst/doc_examples/doc_examples.R
inst/vignette_data/sirstoch.RData
man/Eval-loglik.ode-method.Rd
man/Eval.Rd
man/SierraLeone2014.Rd
man/Transform-loglik.ode-method.Rd
man/Transform-odemodel-method.Rd
man/Transform-prior.ode-method.Rd
man/Transform.Rd
man/apply_link.Rd
man/blowfly.Rd
man/bombay.Rd
man/check_link.Rd
man/coef-fitode-method.Rd
man/coef-fitodeMCMC-method.Rd
man/confint-fitode-method.Rd
man/confint-fitodeMCMC-method.Rd
man/dfun.Rd
man/dfun2.Rd
man/fitode-class.Rd
man/fitode.Rd
man/fitodeMCMC-class.Rd
man/fitodeMCMC.Rd
man/fixpar.Rd
man/grad-loglik.ode-method.Rd
man/grad-odemodel-method.Rd
man/grad.Rd
man/hessian.Rd
man/initialize-loglik.ode-method.Rd
man/initialize-odemodel-method.Rd
man/initialize-prior.ode-method.Rd
man/initialize-solution.ode-method.Rd
man/jacobian-odemodel-method.Rd
man/jacobian.Rd
man/logLik-fitode-method.Rd
man/logLik.sensitivity.Rd
man/loglik.ode-class.Rd
man/make_prior.Rd
man/ode.sensitivity.Rd
man/ode.solve.Rd
man/odemodel-class.Rd
man/phila1918.Rd
man/plot-fitode-missing-method.Rd
man/plot-fitodeMCMC-missing-method.Rd
man/plot_internal.Rd
man/predict-fitode-method.Rd
man/predict-fitodeMCMC-method.Rd
man/prior.ode-class.Rd
man/profile-fitode-method.Rd
man/select_model.Rd
man/select_prior.Rd
man/set_link.Rd
man/show-fitode-method.Rd
man/show-fitodeMCMC-method.Rd
man/show-odemodel-method.Rd
man/simulate-fitode-method.Rd
man/simulate-odemodel-method.Rd
man/simulate_internal.Rd
man/solution.de-class.Rd
man/stdEr-fitode-method.Rd
man/stdEr-fitodeMCMC-method.Rd
man/summary-fitode-method.Rd
man/summary-fitodeMCMC-method.Rd
man/tumorgrowth.Rd
man/update-fitode-method.Rd
man/update-fitodeMCMC-method.Rd
man/vcov-fitode-method.Rd
man/vcov-fitodeMCMC-method.Rd
misc/bombay.R
misc/bombay2.R
misc/bombay_confint_dnbinom.R
misc/bombay_confint_dnbinom.pdf
misc/bombay_confint_dnbinom.rda
misc/bombay_confint_dnbinom_fixgamma.R
misc/bombay_confint_dnbinom_fixgamma.pdf
misc/bombay_confint_dnbinom_fixgamma.rda
misc/bombay_confint_ols_fixgamma.R
misc/bombay_confint_ols_fixgamma.pdf
misc/bombay_confint_ols_fixgamma.rda
misc/bombay_fit.Rmd
misc/bombay_reparam.R
misc/km_approx.Rmd
misc/sir_time.R
misc/sir_time_long.R
misc/slices.rda
misc/transform_example.R
misc/wishlist.md
outputs/fitode-ms.pdf
tests/testthat.R
tests/testthat/test-logLik.R
tests/testthat/test-methods.R
tests/testthat/test-ols.R
tests/testthat/test-prior.R
tests/testthat/test-sensitivity.R
tests/testthat/test-sensitivityLik.R
vignettes/EarnParkBolker_fitode_2024-03-19.pdf
vignettes/Makefile
vignettes/bombay-likelihood.rda
vignettes/brauer-ms-weird-ideas.Rnw
vignettes/brauer-ms.Rnw
vignettes/brauer-ms.bib
vignettes/epidemic.Rnw
vignettes/fitode-ms.Rnw
vignettes/fitode.Rnw
vignettes/fitode.bib
vignettes/interact.cls
vignettes/mkdiff
vignettes/tfs.bst
